r
/
Literate.jl
mirror of https://github.com/fredrikekre/Literate.jl
1
0
Fork 0
Code Releases Activity
Browse Source

Merge remote-tracking branch 'upstream/master' into add-quarto-support

pull/200/head
J S 2 years ago
parent
ac9a21afb2 433efde289
commit
174fe96d6f
10 changed files with 343 additions and 106 deletions
Whitespace
Show all changes Ignore whitespace when comparing lines Ignore changes in amount of whitespace Ignore changes in whitespace at EOL
Unified View
Diff Options
Show Stats Download Patch File Download Diff File
  1. 7
      .github/dependabot.yml
  2. 10
      .github/workflows/TagBot.yml
  3. 8
      .github/workflows/ci.yml
  4. 42
      CHANGELOG.md
  5. 6
      Project.toml
  6. 240
      docs/Manifest.toml
  7. 10
      docs/src/documenter.md
  8. 5
      docs/src/reference.md
  9. 32
      src/Literate.jl
  10. 79
      test/runtests.jl

7
.github/dependabot.yml
Unescape View File

@ -0,0 +1,7 @@
# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
version: 2
updates:
- package-ecosystem: "github-actions"
directory: "/" # Location of package manifests
schedule:
interval: "monthly"

10
.github/workflows/TagBot.yml
Unescape View File

@ -11,5 +11,15 @@ jobs:
steps: steps:
- uses: JuliaRegistries/TagBot@v1 - uses: JuliaRegistries/TagBot@v1
with: with:
changelog: |
{% if custom %}
{{ custom }}
{% endif %}
See [`CHANGELOG.md`](https://github.com/fredrikekre/Literate.jl/blob/master/CHANGELOG.md) for notable changes.
{% if previous_release %}
[Diff since {{ previous_release }}]({{ compare_url }})
{% endif %}
token: ${{ secrets.GITHUB_TOKEN }} token: ${{ secrets.GITHUB_TOKEN }}
ssh: ${{ secrets.DOCUMENTER_KEY }} ssh: ${{ secrets.DOCUMENTER_KEY }}

8
.github/workflows/ci.yml
Unescape View File

@ -15,7 +15,7 @@ jobs:
strategy: strategy:
matrix: matrix:
version: version:
- '1.0' - '1.6'
- '1' - '1'
- 'nightly' - 'nightly'
os: os:
@ -26,7 +26,7 @@ jobs:
- os: macOS-latest - os: macOS-latest
version: '1' version: '1'
steps: steps:
- uses: actions/checkout@v2 - uses: actions/checkout@v4
- uses: julia-actions/setup-julia@v1 - uses: julia-actions/setup-julia@v1
with: with:
version: ${{ matrix.version }} version: ${{ matrix.version }}
@ -39,14 +39,14 @@ jobs:
key: .julia-test-${{ matrix.version }}-${{ hashFiles('Project.toml') }} key: .julia-test-${{ matrix.version }}-${{ hashFiles('Project.toml') }}
- uses: julia-actions/julia-runtest@v1 - uses: julia-actions/julia-runtest@v1
- uses: julia-actions/julia-processcoverage@v1 - uses: julia-actions/julia-processcoverage@v1
- uses: codecov/codecov-action@v1 - uses: codecov/codecov-action@v3
with: with:
file: lcov.info file: lcov.info
docs: docs:
name: Documentation name: Documentation
runs-on: ubuntu-latest runs-on: ubuntu-latest
steps: steps:
- uses: actions/checkout@v2 - uses: actions/checkout@v4
- uses: julia-actions/setup-julia@v1 - uses: julia-actions/setup-julia@v1
with: with:
version: '1' version: '1'

42
CHANGELOG.md
Unescape View File

@ -7,6 +7,33 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
<!-- ## [Unreleased] --> <!-- ## [Unreleased] -->
## [2.16.0] - 2023-11-08
### Added
- "Soft" scoping rules (see e.g. https://github.com/JuliaLang/SoftGlobalScope.jl) are now
available for code execution (markdown and notebook output). This is enabled by default
for Jupyter notebook output (to mimic how the IJulia kernel works), and disabled
otherwise. Soft scope rules can be enabled/disabled with the `softscope :: Bool`
configuration variable. ([#227][github-227], [#230][github-230])
### Changed
- The minimum Julia version requirement for Literate >= 2.16.0 is now 1.6.0 (from 1.0.0).
([#230][github-230])
## [2.15.1] - 2023-11-08
### Fixed
- Fix a bug where `Literate.markdown` with `execute=true` would (try to) output images in
the wrong directory. This only occured when passing a relative output directory.
([#228][github-228], [#229][github-229])
## [2.15.0] - 2023-09-05
### Added
- Documenter style `@raw html` blocks are automatically handled in Jupyter notebook output
(similar to how Documenter style ` ```math ` blocks are rewritten to `$$` blocks).
([#222][github-222], [#223][github-223])
## [2.14.2] - 2023-08-28
### Fixed
- Remove double newline in `Literate.script` output. ([#221][github-221])
## [2.14.1] - 2023-08-04 ## [2.14.1] - 2023-08-04
### Fixed ### Fixed
- Update generated `EditURL` to use a relative path instead and let Documenter figure out - Update generated `EditURL` to use a relative path instead and let Documenter figure out
@ -247,8 +274,19 @@ https://discourse.julialang.org/t/ann-literate-jl/10651 for release announcement
[github-204]: https://github.com/fredrikekre/Literate.jl/issues/204 [github-204]: https://github.com/fredrikekre/Literate.jl/issues/204
[github-205]: https://github.com/fredrikekre/Literate.jl/pull/205 [github-205]: https://github.com/fredrikekre/Literate.jl/pull/205
[github-219]: https://github.com/fredrikekre/Literate.jl/pull/219 [github-219]: https://github.com/fredrikekre/Literate.jl/pull/219
[github-221]: https://github.com/fredrikekre/Literate.jl/pull/221
[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.1...HEAD [github-222]: https://github.com/fredrikekre/Literate.jl/issues/222
[github-223]: https://github.com/fredrikekre/Literate.jl/pull/223
[github-227]: https://github.com/fredrikekre/Literate.jl/issues/227
[github-228]: https://github.com/fredrikekre/Literate.jl/issues/228
[github-229]: https://github.com/fredrikekre/Literate.jl/pull/229
[github-230]: https://github.com/fredrikekre/Literate.jl/pull/230
[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.16.0...HEAD
[2.16.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.1...v2.16.0
[2.15.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.0...v2.15.1
[2.15.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.2...v2.15.0
[2.14.2]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.1...v2.14.2
[2.14.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.0...v2.14.1 [2.14.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.0...v2.14.1
[2.14.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.13.3...v2.14.0 [2.14.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.13.3...v2.14.0
[2.13.4]: https://github.com/fredrikekre/Literate.jl/compare/v2.13.3...v2.13.4 [2.13.4]: https://github.com/fredrikekre/Literate.jl/compare/v2.13.3...v2.13.4

6
Project.toml
Unescape View File

@ -1,6 +1,6 @@
name = "Literate" name = "Literate"
uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306" uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
version = "2.14.1" version = "2.16.0"
[deps] [deps]
Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
@ -9,9 +9,11 @@ JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
REPL = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" REPL = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
[compat] [compat]
Base64 = "1"
IOCapture = "0.2" IOCapture = "0.2"
JSON = "0.18, 0.19, 0.20, 0.21, 1" JSON = "0.18, 0.19, 0.20, 0.21, 1"
julia = "1" REPL = "1"
julia = "1.6"
[extras] [extras]
DisplayAs = "0b91fe84-8a4c-11e9-3e1d-67c38462b6d6" DisplayAs = "0b91fe84-8a4c-11e9-3e1d-67c38462b6d6"

240
docs/Manifest.toml
Unescape View File

@ -39,15 +39,15 @@ version = "1.16.1+1"
[[CodecZlib]] [[CodecZlib]]
deps = ["TranscodingStreams", "Zlib_jll"] deps = ["TranscodingStreams", "Zlib_jll"]
git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092" git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
uuid = "944b1d66-785c-5afd-91f1-9de20f533193" uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
version = "0.7.2" version = "0.7.3"
[[ColorSchemes]] [[ColorSchemes]]
deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
git-tree-sha1 = "dd3000d954d483c1aad05fe1eb9e6a715c97013e" git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129"
uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
version = "3.22.0" version = "3.24.0"
[[ColorTypes]] [[ColorTypes]]
deps = ["FixedPointNumbers", "Random"] deps = ["FixedPointNumbers", "Random"]
@ -75,9 +75,9 @@ version = "0.12.10"
[[Compat]] [[Compat]]
deps = ["UUIDs"] deps = ["UUIDs"]
git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7" git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "4.9.0" version = "4.10.0"
weakdeps = ["Dates", "LinearAlgebra"] weakdeps = ["Dates", "LinearAlgebra"]
[Compat.extensions] [Compat.extensions]
@ -90,9 +90,9 @@ version = "1.0.5+0"
[[ConcurrentUtilities]] [[ConcurrentUtilities]]
deps = ["Serialization", "Sockets"] deps = ["Serialization", "Sockets"]
git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e" git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519"
uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
version = "2.2.1" version = "2.3.0"
[[Contour]] [[Contour]]
git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781"
@ -127,18 +127,24 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.9.3" version = "0.9.3"
[[Documenter]] [[Documenter]]
deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "PrecompileTools", "REPL", "Test", "Unicode"] deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "Downloads", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "Test", "Unicode"]
git-tree-sha1 = "34e4566ad9f151fcc9a9a9c1868b2dc865fa195c" git-tree-sha1 = "ad7d14c9ab91014ed8837d79c09aa6af83b965d7"
repo-rev = "master" repo-rev = "master"
repo-url = "https://github.com/JuliaDocs/Documenter.jl.git" repo-url = "https://github.com/JuliaDocs/Documenter.jl.git"
uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
version = "0.28.0-DEV" version = "1.1.2"
[[Downloads]] [[Downloads]]
deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
version = "1.6.0" version = "1.6.0"
[[EpollShim_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643"
uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43"
version = "0.0.20230411+0"
[[ExceptionUnwrapping]] [[ExceptionUnwrapping]]
deps = ["Test"] deps = ["Test"]
git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96" git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96"
@ -158,10 +164,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
version = "0.4.1" version = "0.4.1"
[[FFMPEG_jll]] [[FFMPEG_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd" git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e"
uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
version = "4.4.2+2" version = "4.4.4+1"
[[FileWatching]] [[FileWatching]]
uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
@ -204,15 +210,15 @@ version = "3.3.8+0"
[[GR]] [[GR]]
deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"]
git-tree-sha1 = "d73afa4a2bb9de56077242d98cf763074ab9a970" git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f"
uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
version = "0.72.9" version = "0.72.10"
[[GR_jll]] [[GR_jll]]
deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "f61f768bf090d97c532d24b64e07b237e9bb7b6b" git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd"
uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
version = "0.72.9+0" version = "0.72.10+0"
[[Gettext_jll]] [[Gettext_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
@ -221,10 +227,10 @@ uuid = "78b55507-aeef-58d4-861c-77aaff3498b1"
version = "0.21.0+0" version = "0.21.0+0"
[[Glib_jll]] [[Glib_jll]]
deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Pkg", "Zlib_jll"] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
git-tree-sha1 = "d3b3624125c1474292d0d8ed0f65554ac37ddb23" git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17"
uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
version = "2.74.0+2" version = "2.76.5+0"
[[Graphite2_jll]] [[Graphite2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -239,9 +245,9 @@ version = "1.0.2"
[[HTTP]] [[HTTP]]
deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
git-tree-sha1 = "cb56ccdd481c0dd7f975ad2b3b62d9eda088f7e2" git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
version = "1.9.14" version = "1.10.0"
[[HarfBuzz_jll]] [[HarfBuzz_jll]]
deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"]
@ -266,15 +272,15 @@ version = "0.2.2"
[[JLFzf]] [[JLFzf]]
deps = ["Pipe", "REPL", "Random", "fzf_jll"] deps = ["Pipe", "REPL", "Random", "fzf_jll"]
git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185" git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
version = "0.1.5" version = "0.1.6"
[[JLLWrappers]] [[JLLWrappers]]
deps = ["Preferences"] deps = ["Artifacts", "Preferences"]
git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.4.1" version = "1.5.0"
[[JSON]] [[JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"] deps = ["Dates", "Mmap", "Parsers", "Unicode"]
@ -313,9 +319,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
version = "2.10.1+0" version = "2.10.1+0"
[[LaTeXStrings]] [[LaTeXStrings]]
git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
version = "1.3.0" version = "1.3.1"
[[Latexify]] [[Latexify]]
deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"]
@ -331,6 +337,11 @@ version = "0.16.1"
DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8"
[[LazilyInitializedFields]]
git-tree-sha1 = "410fe4739a4b092f2ffe36fcb0dcc3ab12648ce1"
uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf"
version = "1.2.1"
[[LibCURL]] [[LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"] deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
@ -378,10 +389,10 @@ uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
version = "1.42.0+0" version = "1.42.0+0"
[[Libiconv_jll]] [[Libiconv_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71" git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175"
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
version = "1.16.1+2" version = "1.17.0+0"
[[Libmount_jll]] [[Libmount_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -409,13 +420,13 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
deps = ["Base64", "IOCapture", "JSON", "REPL"] deps = ["Base64", "IOCapture", "JSON", "REPL"]
path = ".." path = ".."
uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306" uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
version = "2.14.1" version = "2.16.0"
[[LogExpFunctions]] [[LogExpFunctions]]
deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f" git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa"
uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
version = "0.3.24" version = "0.3.26"
[LogExpFunctions.extensions] [LogExpFunctions.extensions]
LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
@ -432,15 +443,15 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
[[LoggingExtras]] [[LoggingExtras]]
deps = ["Dates", "Logging"] deps = ["Dates", "Logging"]
git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e" git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
version = "1.0.0" version = "1.0.3"
[[MacroTools]] [[MacroTools]]
deps = ["Markdown", "Random"] deps = ["Markdown", "Random"]
git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2" git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48"
uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
version = "0.5.10" version = "0.5.11"
[[Markdown]] [[Markdown]]
deps = ["Base64"] deps = ["Base64"]
@ -448,9 +459,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
[[MarkdownAST]] [[MarkdownAST]]
deps = ["AbstractTrees", "Markdown"] deps = ["AbstractTrees", "Markdown"]
git-tree-sha1 = "e8513266815200c0c8f522d6d44ffb5e9b366ae4" git-tree-sha1 = "465a70f0fc7d443a00dcdc3267a497397b8a3899"
uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391" uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391"
version = "0.1.1" version = "0.1.2"
[[MbedTLS]] [[MbedTLS]]
deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"]
@ -515,9 +526,9 @@ version = "1.4.1"
[[OpenSSL_jll]] [[OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"] deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "bbb5c2115d63c2f1451cb70e5ef75e8fe4707019" git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "1.1.22+0" version = "3.0.12+0"
[[Opus_jll]] [[Opus_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -571,9 +582,9 @@ version = "1.3.5"
[[Plots]] [[Plots]]
deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
git-tree-sha1 = "9f8675a55b37a70aa23177ec110f6e3f4dd68466" git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
version = "1.38.17" version = "1.39.0"
[Plots.extensions] [Plots.extensions]
FileIOExt = "FileIO" FileIOExt = "FileIO"
@ -591,25 +602,25 @@ version = "1.38.17"
[[PrecompileTools]] [[PrecompileTools]]
deps = ["Preferences"] deps = ["Preferences"]
git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81" git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f"
uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
version = "1.1.2" version = "1.2.0"
[[Preferences]] [[Preferences]]
deps = ["TOML"] deps = ["TOML"]
git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1" git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e"
uuid = "21216c6a-2e73-6563-6e65-726566657250" uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.4.0" version = "1.4.1"
[[Printf]] [[Printf]]
deps = ["Unicode"] deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
[[Qt6Base_jll]] [[Qt6Base_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"]
git-tree-sha1 = "364898e8f13f7eaaceec55fd3d08680498c0aa6e" git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b"
uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56"
version = "6.4.2+3" version = "6.5.3+1"
[[REPL]] [[REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
@ -636,11 +647,17 @@ git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
uuid = "189a3867-3050-52da-a836-e630ba90ab69" uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.2.2" version = "1.2.2"
[[RegistryInstances]]
deps = ["LazilyInitializedFields", "Pkg", "TOML", "Tar"]
git-tree-sha1 = "ffd19052caf598b8653b99404058fce14828be51"
uuid = "2792f1a3-b283-48e8-9a74-f99dce5104f3"
version = "0.1.0"
[[RelocatableFolders]] [[RelocatableFolders]]
deps = ["SHA", "Scratch"] deps = ["SHA", "Scratch"]
git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691" git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864"
uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00"
version = "1.0.0" version = "1.0.1"
[[Requires]] [[Requires]]
deps = ["UUIDs"] deps = ["UUIDs"]
@ -654,9 +671,9 @@ version = "0.7.0"
[[Scratch]] [[Scratch]]
deps = ["Dates"] deps = ["Dates"]
git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a" git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
uuid = "6c6a2e73-6563-6170-7368-637461726353" uuid = "6c6a2e73-6563-6170-7368-637461726353"
version = "1.2.0" version = "1.2.1"
[[Serialization]] [[Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
@ -677,9 +694,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
[[SortingAlgorithms]] [[SortingAlgorithms]]
deps = ["DataStructures"] deps = ["DataStructures"]
git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee" git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "1.1.1" version = "1.2.0"
[[SparseArrays]] [[SparseArrays]]
deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
@ -692,15 +709,15 @@ version = "1.9.0"
[[StatsAPI]] [[StatsAPI]]
deps = ["LinearAlgebra"] deps = ["LinearAlgebra"]
git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7" git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
version = "1.6.0" version = "1.7.0"
[[StatsBase]] [[StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4" git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.34.0" version = "0.34.2"
[[SuiteSparse_jll]] [[SuiteSparse_jll]]
deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"]
@ -728,15 +745,18 @@ deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[[TranscodingStreams]] [[TranscodingStreams]]
deps = ["Random", "Test"] git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84"
git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
version = "0.9.13" version = "0.10.2"
weakdeps = ["Random", "Test"]
[TranscodingStreams.extensions]
TestExt = ["Test", "Random"]
[[URIs]] [[URIs]]
git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a" git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
version = "1.4.2" version = "1.5.1"
[[UUIDs]] [[UUIDs]]
deps = ["Random", "SHA"] deps = ["Random", "SHA"]
@ -753,9 +773,9 @@ version = "0.4.1"
[[Unitful]] [[Unitful]]
deps = ["Dates", "LinearAlgebra", "Random"] deps = ["Dates", "LinearAlgebra", "Random"]
git-tree-sha1 = "1cd9b6d3f637988ca788007b7466c132feebe263" git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee"
uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
version = "1.16.1" version = "1.17.0"
[Unitful.extensions] [Unitful.extensions]
ConstructionBaseUnitfulExt = "ConstructionBase" ConstructionBaseUnitfulExt = "ConstructionBase"
@ -776,11 +796,17 @@ git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78"
uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"
version = "0.2.0" version = "0.2.0"
[[Vulkan_Loader_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]
git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59"
uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c"
version = "1.3.243+0"
[[Wayland_jll]] [[Wayland_jll]]
deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"]
git-tree-sha1 = "ed8d92d9774b077c53e1da50fd81a36af3744c1c" git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703"
uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89"
version = "1.21.0+0" version = "1.21.0+1"
[[Wayland_protocols_jll]] [[Wayland_protocols_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -789,10 +815,10 @@ uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91"
version = "1.25.0+0" version = "1.25.0+0"
[[XML2_jll]] [[XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73" git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.10.3+0" version = "2.11.5+0"
[[XSLT_jll]] [[XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]
@ -802,9 +828,21 @@ version = "1.1.34+0"
[[XZ_jll]] [[XZ_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl"] deps = ["Artifacts", "JLLWrappers", "Libdl"]
git-tree-sha1 = "2222b751598bd9f4885c9ce9cd23e83404baa8ce" git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0"
uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
version = "5.4.3+1" version = "5.4.4+0"
[[Xorg_libICE_jll]]
deps = ["Libdl", "Pkg"]
git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5"
uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c"
version = "1.0.10+1"
[[Xorg_libSM_jll]]
deps = ["Libdl", "Pkg", "Xorg_libICE_jll"]
git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18"
uuid = "c834827a-8449-5923-a945-d239c165b7dd"
version = "1.2.3+0"
[[Xorg_libX11_jll]] [[Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
@ -884,6 +922,12 @@ git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4"
uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a"
version = "1.1.2+0" version = "1.1.2+0"
[[Xorg_xcb_util_cursor_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"]
git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd"
uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43"
version = "0.1.4+0"
[[Xorg_xcb_util_image_jll]] [[Xorg_xcb_util_image_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97" git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97"
@ -943,11 +987,23 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.5.5+0" version = "1.5.5+0"
[[eudev_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]
git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba"
uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06"
version = "3.2.9+0"
[[fzf_jll]] [[fzf_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56" git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
version = "0.29.0+0" version = "0.35.1+0"
[[gperf_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033"
uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70"
version = "3.1.1+0"
[[libaom_jll]] [[libaom_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -966,12 +1022,24 @@ deps = ["Artifacts", "Libdl"]
uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
version = "5.8.0+0" version = "5.8.0+0"
[[libevdev_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22"
uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc"
version = "1.11.0+0"
[[libfdk_aac_jll]] [[libfdk_aac_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55"
uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
version = "2.0.2+0" version = "2.0.2+0"
[[libinput_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"]
git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce"
uuid = "36db933b-70db-51c0-b978-0f229ee0e533"
version = "1.18.0+0"
[[libpng_jll]] [[libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c"
@ -984,6 +1052,12 @@ git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c"
uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
version = "1.3.7+1" version = "1.3.7+1"
[[mtdev_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11"
uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e"
version = "1.1.6+0"
[[nghttp2_jll]] [[nghttp2_jll]]
deps = ["Artifacts", "Libdl"] deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
@ -1008,6 +1082,6 @@ version = "3.5.0+0"
[[xkbcommon_jll]] [[xkbcommon_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"]
git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a" git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37"
uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
version = "1.4.1+0" version = "1.4.1+1"

10
docs/src/documenter.md
Unescape View File

@ -45,6 +45,16 @@ if we set `documenter = true`:
\int f dx \int f dx
$$ $$
``` ```
- Whereas Documenter requires HTML blocks to be escaped
````
```@raw html
<tag>...</tag>
```
````
the output to a notebook markdown cell will be raw HTML
```
<tag>...</tag>
```
### [`Literate.script`](@ref): ### [`Literate.script`](@ref):
- Documenter style `@ref`s and `@id` will be removed. This means that you can use - Documenter style `@ref`s and `@id` will be removed. This means that you can use

5
docs/src/reference.md
Unescape View File

@ -0,0 +1,5 @@
# Reference
```@docs
Literate
```

32
src/Literate.jl
Unescape View File

@ -186,6 +186,8 @@ function replace_default(content, sym;
# Replace Markdown stdlib math environments # Replace Markdown stdlib math environments
push!(repls, r"```math(.*?)```"s => s"$$\1$$") push!(repls, r"```math(.*?)```"s => s"$$\1$$")
push!(repls, r"(?<!`)``([^`]+?)``(?!`)" => s"$\1$") push!(repls, r"(?<!`)``([^`]+?)``(?!`)" => s"$\1$")
# Remove Documenter escape sequence around HTML
push!(repls, r"```@raw(\h+)html(.*?)```"s => s"\2")
else # sym === :jl else # sym === :jl
push!(repls, r"^#(!md|!nb|jl) "m => "") # remove leading #!md, #!nb, and #jl push!(repls, r"^#(!md|!nb|jl) "m => "") # remove leading #!md, #!nb, and #jl
push!(repls, r" #(!md|!nb|jl)$"m => "") # remove trailing #!md, #!nb, and #jl push!(repls, r" #(!md|!nb|jl)$"m => "") # remove trailing #!md, #!nb, and #jl
@ -322,6 +324,7 @@ function create_configuration(inputfile; user_config, user_kwargs, type=nothing)
cfg["flavor"] = type === (:md) ? DocumenterFlavor() : DefaultFlavor() cfg["flavor"] = type === (:md) ? DocumenterFlavor() : DefaultFlavor()
cfg["credit"] = true cfg["credit"] = true
cfg["mdstrings"] = false cfg["mdstrings"] = false
cfg["softscope"] = type === (:nb) ? true : false # on for Jupyter notebooks
cfg["keep_comments"] = false cfg["keep_comments"] = false
cfg["execute"] = type === :md ? false : true cfg["execute"] = type === :md ? false : true
cfg["codefence"] = pick_codefence( cfg["codefence"] = pick_codefence(
@ -419,6 +422,8 @@ Available options:
- `devurl` (default: `"dev"`): URL for "in-development" docs, see [Documenter docs] - `devurl` (default: `"dev"`): URL for "in-development" docs, see [Documenter docs]
(https://juliadocs.github.io/Documenter.jl/). Unused if `repo_root_url`/ (https://juliadocs.github.io/Documenter.jl/). Unused if `repo_root_url`/
`nbviewer_root_url`/`binder_root_url` are set. `nbviewer_root_url`/`binder_root_url` are set.
- `softscope` (default: `true` for Jupyter notebooks, `false` otherwise): enable/disable
"soft" scoping rules when executing, see e.g. https://github.com/JuliaLang/SoftGlobalScope.jl.
- `repo_root_url`: URL to the root of the repository. Determined automatically on Travis CI, - `repo_root_url`: URL to the root of the repository. Determined automatically on Travis CI,
GitHub Actions and GitLab CI. Used for `@__REPO_ROOT_URL__`. GitHub Actions and GitLab CI. Used for `@__REPO_ROOT_URL__`.
- `nbviewer_root_url`: URL to the root of the repository as seen on nbviewer. Determined - `nbviewer_root_url`: URL to the root of the repository as seen on nbviewer. Determined
@ -514,17 +519,18 @@ function script(inputfile, outputdir=pwd(); config::AbstractDict=Dict(), kwargs.
# create the script file # create the script file
ioscript = IOBuffer() ioscript = IOBuffer()
isfirst = true
for chunk in chunks for chunk in chunks
if isa(chunk, CodeChunk) if isa(chunk, CodeChunk)
isfirst ? (isfirst = false) : write(ioscript, '\n') # add a newline between each chunk
for line in chunk.lines for line in chunk.lines
write(ioscript, line, '\n') write(ioscript, line, '\n')
end end
write(ioscript, '\n') # add a newline between each chunk
elseif isa(chunk, MDChunk) && config["keep_comments"]::Bool elseif isa(chunk, MDChunk) && config["keep_comments"]::Bool
isfirst ? (isfirst = false) : write(ioscript, '\n') # add a newline between each chunk
for line in chunk.lines for line in chunk.lines
write(ioscript, rstrip(line.first * "# " * line.second) * '\n') write(ioscript, rstrip(line.first * "# " * line.second) * '\n')
end end
write(ioscript, '\n') # add a newline between each chunk
end end
end end
@ -583,12 +589,14 @@ function markdown(inputfile, outputdir=pwd(); config::AbstractDict=Dict(), kwarg
any(write_line, chunk.lines) && write(iomd, seekstart(iocode)) any(write_line, chunk.lines) && write(iomd, seekstart(iocode))
if execute if execute
cd(config["literate_outputdir"]) do cd(config["literate_outputdir"]) do
execute_markdown!(iomd, sb, join(chunk.lines, '\n'), outputdir; execute_markdown!(iomd, sb, join(chunk.lines, '\n'),
config["literate_outputdir"];
inputfile=config["literate_inputfile"], inputfile=config["literate_inputfile"],
fake_source=config["literate_outputfile"], fake_source=config["literate_outputfile"],
flavor=config["flavor"], flavor=config["flavor"],
image_formats=config["image_formats"], image_formats=config["image_formats"],
file_prefix="$(config["name"])-$(chunknum)", file_prefix="$(config["name"])-$(chunknum)",
softscope=config["softscope"],
) )
end end
end end
@ -606,9 +614,10 @@ end
function execute_markdown!(io::IO, sb::Module, block::String, outputdir; function execute_markdown!(io::IO, sb::Module, block::String, outputdir;
inputfile::String, fake_source::String, inputfile::String, fake_source::String,
flavor::AbstractFlavor, image_formats::Vector, file_prefix::String) flavor::AbstractFlavor, image_formats::Vector, file_prefix::String,
softscope::Bool)
# TODO: Deal with explicit display(...) calls # TODO: Deal with explicit display(...) calls
r, str, _ = execute_block(sb, block; inputfile=inputfile, fake_source=fake_source) r, str, _ = execute_block(sb, block; inputfile=inputfile, fake_source=fake_source, softscope=softscope)
# issue #101: consecutive codefenced blocks need newline # issue #101: consecutive codefenced blocks need newline
# issue #144: quadruple backticks allow for triple backticks in the output # issue #144: quadruple backticks allow for triple backticks in the output
plain_fence = "\n````\n" => "\n````" plain_fence = "\n````\n" => "\n````"
@ -743,7 +752,8 @@ function jupyter_notebook(chunks, config)
try try
cd(config["literate_outputdir"]) do cd(config["literate_outputdir"]) do
nb = execute_notebook(nb; inputfile=config["literate_inputfile"], nb = execute_notebook(nb; inputfile=config["literate_inputfile"],
fake_source=config["literate_outputfile"]) fake_source=config["literate_outputfile"],
softscope=config["softscope"])
end end
catch err catch err
@error "error when executing notebook based on input file: " * @error "error when executing notebook based on input file: " *
@ -754,7 +764,7 @@ function jupyter_notebook(chunks, config)
return nb return nb
end end
function execute_notebook(nb; inputfile::String, fake_source::String) function execute_notebook(nb; inputfile::String, fake_source::String, softscope::Bool)
sb = sandbox() sb = sandbox()
execution_count = 0 execution_count = 0
for cell in nb["cells"] for cell in nb["cells"]
@ -762,7 +772,7 @@ function execute_notebook(nb; inputfile::String, fake_source::String)
execution_count += 1 execution_count += 1
cell["execution_count"] = execution_count cell["execution_count"] = execution_count
block = join(cell["source"]) block = join(cell["source"])
r, str, display_dicts = execute_block(sb, block; inputfile=inputfile, fake_source=fake_source) r, str, display_dicts = execute_block(sb, block; inputfile=inputfile, fake_source=fake_source, softscope=softscope)
# str should go into stream # str should go into stream
if !isempty(str) if !isempty(str)
@ -844,7 +854,7 @@ function Base.display(ld::LiterateDisplay, mime::MIME, x)
end end
# Execute a code-block in a module and capture stdout/stderr and the result # Execute a code-block in a module and capture stdout/stderr and the result
function execute_block(sb::Module, block::String; inputfile::String, fake_source::String) function execute_block(sb::Module, block::String; inputfile::String, fake_source::String, softscope::Bool)
@debug """execute_block($sb, block) @debug """execute_block($sb, block)
``` ```
$(block) $(block)
@ -860,8 +870,12 @@ function execute_block(sb::Module, block::String; inputfile::String, fake_source
# `rethrow = Union{}` means that we try-catch all the exceptions thrown in the do-block # `rethrow = Union{}` means that we try-catch all the exceptions thrown in the do-block
# and return them via the return value (they get handled below). # and return them via the return value (they get handled below).
c = IOCapture.capture(rethrow = Union{}) do c = IOCapture.capture(rethrow = Union{}) do
if softscope
include_string(REPL.softscope, sb, block, fake_source)
else
include_string(sb, block, fake_source) include_string(sb, block, fake_source)
end end
end
popdisplay(disp) # IOCapture.capture has a try-catch so should always end up here popdisplay(disp) # IOCapture.capture has a try-catch so should always end up here
if c.error if c.error
error(""" error("""

79
test/runtests.jl
Unescape View File

@ -236,6 +236,11 @@ content = """
## Indented comment ## Indented comment
end end
# Some inline html
# ```@raw html
# <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>
# ```
# Semicolon output supression # Semicolon output supression
1 + 1; 1 + 1;
@ -348,7 +353,6 @@ const GITLAB_ENV = Dict(
hidden2 * hidden2 hidden2 * hidden2
# This file was generated using Literate.jl, https://github.com/fredrikekre/Literate.jl # This file was generated using Literate.jl, https://github.com/fredrikekre/Literate.jl
""" """
script = read(joinpath(outdir, "inputfile.jl"), String) script = read(joinpath(outdir, "inputfile.jl"), String)
@test script == expected_script @test script == expected_script
@ -605,6 +609,11 @@ end end
end end
```` ````
Some inline html
```@raw html
<a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>
```
Semicolon output supression Semicolon output supression
````@example inputfile ````@example inputfile
@ -904,8 +913,43 @@ end end
write(f, "1 + 1") write(f, "1 + 1")
Literate.markdown(f, outdir) Literate.markdown(f, outdir)
@test occursin("file_with_space", read(joinpath(outdir, "file with space.md"), String)) @test occursin("file_with_space", read(joinpath(outdir, "file with space.md"), String))
# Relative output directory + image output
# https://github.com/fredrikekre/Literate.jl/issues/228
write(
inputfile,
"""
struct SVG end
Base.show(io::IO, mime::MIME"image/svg+xml", ::SVG) = print(io, "issue228")
SVG()
""",
)
Literate.markdown(inputfile, relpath(outdir); execute=true,
flavor=Literate.CommonMarkFlavor())
@test read(joinpath(outdir, "inputfile-1.svg"), String) == "issue228"
# Softscope
write(
inputfile,
"""
ret = 0
for k = 1:10
ret += k
end end
println("ret = ", ret)
"""
)
Literate.markdown(inputfile, outdir; execute=true, softscope=true)
@test occursin("ret = 55", read(joinpath(outdir, "inputfile.md"), String))
## Disabled softscope
try
Literate.markdown(inputfile, outdir; execute=true, softscope=false)
error("unreachable")
catch err
@test occursin(r"`?ret`? not defined", sprint(Base.showerror, err))
end end
end # cd(sandbox)
end # mktemp
end end end end
@testset "Literate.notebook" begin; Base.CoreLogging.with_logger(Base.CoreLogging.NullLogger()) do @testset "Literate.notebook" begin; Base.CoreLogging.with_logger(Base.CoreLogging.NullLogger()) do
@ -1049,6 +1093,14 @@ end end
] ]
""", """,
"""
"source": [
"Some inline html\\n",
"\\n",
" <a href=\\"https://github.com/fredrikekre/Literate.jl\\">Literate.jl</a>"
]
""",
""" """
"metadata": { "metadata": {
"meta": "data" "meta": "data"
@ -1311,8 +1363,33 @@ end end
@test keys(cellout[1]["data"]) == Set(("text/latex",)) @test keys(cellout[1]["data"]) == Set(("text/latex",))
@test cellout[1]["data"]["text/latex"] == "DF(4) as text/latex" @test cellout[1]["data"]["text/latex"] == "DF(4) as text/latex"
@test !haskey(cellout[1], "execution_count") @test !haskey(cellout[1], "execution_count")
# Softscope
# TODO: Windows CI says here, but no longer: The input file that have been used
# above multiple times without problem now gives
# "SystemError: opening file: Invalid argument" for some reason...
new_inputfile = "inputfile2.jl"
write(
new_inputfile,
"""
ret = 0
for k = 1:10
ret += k
end end
println("ret = ", ret)
"""
)
Literate.notebook(new_inputfile, outdir)
@test occursin("ret = 55", read(joinpath(outdir, "inputfile2.ipynb"), String))
## Disabled softscope
try
Literate.notebook(new_inputfile, outdir; softscope=false)
error("unreachable")
catch err
@test occursin(r"`?ret`? not defined", sprint(Base.showerror, err))
end end
end # cd(sandbox)
end # mktempdir
end end end end
@testset "Configuration" begin; Base.CoreLogging.with_logger(Base.CoreLogging.NullLogger()) do @testset "Configuration" begin; Base.CoreLogging.with_logger(Base.CoreLogging.NullLogger()) do

Write Preview
Loading…
Cancel
Save