From 329a44af808bc628f28f9085bcbc89df41202dac Mon Sep 17 00:00:00 2001
From: Christian Schilling <account@christianschilling.net>
Date: Sun, 27 Aug 2023 10:24:43 +0200
Subject: [PATCH 01/16] Literate.script: do not end with double newline (#221)

---
 src/Literate.jl  | 5 +++--
 test/runtests.jl | 1 -
 2 files changed, 3 insertions(+), 3 deletions(-)

diff --git a/src/Literate.jl b/src/Literate.jl
index d650bc3..c7fe917 100644
--- a/src/Literate.jl
+++ b/src/Literate.jl
@@ -501,17 +501,18 @@ function script(inputfile, outputdir=pwd(); config::AbstractDict=Dict(), kwargs.
 
     # create the script file
     ioscript = IOBuffer()
+    isfirst = true
     for chunk in chunks
         if isa(chunk, CodeChunk)
+            isfirst ? (isfirst = false) : write(ioscript, '\n') # add a newline between each chunk
             for line in chunk.lines
                 write(ioscript, line, '\n')
             end
-            write(ioscript, '\n') # add a newline between each chunk
         elseif isa(chunk, MDChunk) && config["keep_comments"]::Bool
+            isfirst ? (isfirst = false) : write(ioscript, '\n') # add a newline between each chunk
             for line in chunk.lines
                 write(ioscript, rstrip(line.first * "# " * line.second) * '\n')
             end
-            write(ioscript, '\n') # add a newline between each chunk
         end
     end
 
diff --git a/test/runtests.jl b/test/runtests.jl
index c31c32b..5970b06 100644
--- a/test/runtests.jl
+++ b/test/runtests.jl
@@ -345,7 +345,6 @@ const GITLAB_ENV = Dict(
             hidden2 * hidden2
 
             # This file was generated using Literate.jl, https://github.com/fredrikekre/Literate.jl
-
             """
             script = read(joinpath(outdir, "inputfile.jl"), String)
             @test script == expected_script

From 6962444236129e999ea2053dad6a8ffdcbae9b82 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Mon, 28 Aug 2023 17:30:37 +0200
Subject: [PATCH 02/16] Update doc build dependencies.

---
 docs/Manifest.toml | 46 +++++++++++++++++++++++-----------------------
 1 file changed, 23 insertions(+), 23 deletions(-)

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
index 2750ce1..ebd7cb5 100644
--- a/docs/Manifest.toml
+++ b/docs/Manifest.toml
@@ -45,9 +45,9 @@ version = "0.7.2"
 
 [[ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
-git-tree-sha1 = "dd3000d954d483c1aad05fe1eb9e6a715c97013e"
+git-tree-sha1 = "d9a8f86737b665e15a9641ecbac64deef9ce6724"
 uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
-version = "3.22.0"
+version = "3.23.0"
 
 [[ColorTypes]]
 deps = ["FixedPointNumbers", "Random"]
@@ -128,7 +128,7 @@ version = "0.9.3"
 
 [[Documenter]]
 deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "PrecompileTools", "REPL", "Test", "Unicode"]
-git-tree-sha1 = "34e4566ad9f151fcc9a9a9c1868b2dc865fa195c"
+git-tree-sha1 = "6ff1d294ae0cc56ea8a283a1d88dac2b00336ebc"
 repo-rev = "master"
 repo-url = "https://github.com/JuliaDocs/Documenter.jl.git"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
@@ -209,10 +209,10 @@ uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
 version = "0.72.9"
 
 [[GR_jll]]
-deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"]
-git-tree-sha1 = "f61f768bf090d97c532d24b64e07b237e9bb7b6b"
+deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"]
+git-tree-sha1 = "1596bab77f4f073a14c62424283e7ebff3072eca"
 uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
-version = "0.72.9+0"
+version = "0.72.9+1"
 
 [[Gettext_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
@@ -271,10 +271,10 @@ uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
 version = "0.1.5"
 
 [[JLLWrappers]]
-deps = ["Preferences"]
-git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1"
+deps = ["Artifacts", "Preferences"]
+git-tree-sha1 = "7e5d6779a1e09a36db2a7b6cff50942a0a7d0fca"
 uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
-version = "1.4.1"
+version = "1.5.0"
 
 [[JSON]]
 deps = ["Dates", "Mmap", "Parsers", "Unicode"]
@@ -413,9 +413,9 @@ version = "2.14.1"
 
 [[LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]
-git-tree-sha1 = "c3ce8e7420b3a6e071e0fe4745f5d4300e37b13f"
+git-tree-sha1 = "7d6dd4e9212aebaeed356de34ccf262a3cd415aa"
 uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688"
-version = "0.3.24"
+version = "0.3.26"
 
     [LogExpFunctions.extensions]
     LogExpFunctionsChainRulesCoreExt = "ChainRulesCore"
@@ -432,15 +432,15 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[LoggingExtras]]
 deps = ["Dates", "Logging"]
-git-tree-sha1 = "cedb76b37bc5a6c702ade66be44f831fa23c681e"
+git-tree-sha1 = "a03c77519ab45eb9a34d3cfe2ca223d79c064323"
 uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
-version = "1.0.0"
+version = "1.0.1"
 
 [[MacroTools]]
 deps = ["Markdown", "Random"]
-git-tree-sha1 = "42324d08725e200c23d4dfb549e0d5d89dede2d2"
+git-tree-sha1 = "9ee1618cbf5240e6d4e0371d6f24065083f60c48"
 uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09"
-version = "0.5.10"
+version = "0.5.11"
 
 [[Markdown]]
 deps = ["Base64"]
@@ -591,9 +591,9 @@ version = "1.38.17"
 
 [[PrecompileTools]]
 deps = ["Preferences"]
-git-tree-sha1 = "9673d39decc5feece56ef3940e5dafba15ba0f81"
+git-tree-sha1 = "03b4c25b43cb84cee5c90aa9b5ea0a78fd848d2f"
 uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a"
-version = "1.1.2"
+version = "1.2.0"
 
 [[Preferences]]
 deps = ["TOML"]
@@ -734,9 +734,9 @@ uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
 version = "0.9.13"
 
 [[URIs]]
-git-tree-sha1 = "074f993b0ca030848b897beff716d93aca60f06a"
+git-tree-sha1 = "b7a5e99f24892b6824a954199a45e9ffcc1c70f0"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.4.2"
+version = "1.5.0"
 
 [[UUIDs]]
 deps = ["Random", "SHA"]
@@ -753,9 +753,9 @@ version = "0.4.1"
 
 [[Unitful]]
 deps = ["Dates", "LinearAlgebra", "Random"]
-git-tree-sha1 = "1cd9b6d3f637988ca788007b7466c132feebe263"
+git-tree-sha1 = "a72d22c7e13fe2de562feda8645aa134712a87ee"
 uuid = "1986cc42-f94f-5a68-af5c-568840ba703d"
-version = "1.16.1"
+version = "1.17.0"
 
     [Unitful.extensions]
     ConstructionBaseUnitfulExt = "ConstructionBase"
@@ -802,9 +802,9 @@ version = "1.1.34+0"
 
 [[XZ_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "2222b751598bd9f4885c9ce9cd23e83404baa8ce"
+git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0"
 uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
-version = "5.4.3+1"
+version = "5.4.4+0"
 
 [[Xorg_libX11_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]

From 14a6f3d6c5729fa694fb91649cb59112a5951444 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Mon, 28 Aug 2023 17:31:43 +0200
Subject: [PATCH 03/16] Add changelog for new release.

---
 CHANGELOG.md | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 920e015..cc419eb 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,7 +5,9 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-<!-- ## [Unreleased] -->
+## [Unreleased]
+### Fixed
+- Remove double newline in `Literate.script` output. ([#221][github-221])
 
 ## [2.14.1] - 2023-08-04
 ### Fixed
@@ -247,6 +249,7 @@ https://discourse.julialang.org/t/ann-literate-jl/10651 for release announcement
 [github-204]: https://github.com/fredrikekre/Literate.jl/issues/204
 [github-205]: https://github.com/fredrikekre/Literate.jl/pull/205
 [github-219]: https://github.com/fredrikekre/Literate.jl/pull/219
+[github-221]: https://github.com/fredrikekre/Literate.jl/pull/221
 
 [Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.1...HEAD
 [2.14.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.0...v2.14.1

From c1af5d485c66daf889160cb8522e17c15e6e24d9 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Mon, 28 Aug 2023 17:32:44 +0200
Subject: [PATCH 04/16] Set version to 2.14.2.

---
 CHANGELOG.md       | 7 +++++--
 Project.toml       | 2 +-
 docs/Manifest.toml | 2 +-
 3 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index cc419eb..323cd03 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,7 +5,9 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [Unreleased]
+<!-- ## [Unreleased] -->
+
+## [2.14.2] - 2023-08-28
 ### Fixed
 - Remove double newline in `Literate.script` output. ([#221][github-221])
 
@@ -251,7 +253,8 @@ https://discourse.julialang.org/t/ann-literate-jl/10651 for release announcement
 [github-219]: https://github.com/fredrikekre/Literate.jl/pull/219
 [github-221]: https://github.com/fredrikekre/Literate.jl/pull/221
 
-[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.1...HEAD
+[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.2...HEAD
+[2.14.2]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.1...v2.14.2
 [2.14.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.0...v2.14.1
 [2.14.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.13.3...v2.14.0
 [2.13.4]: https://github.com/fredrikekre/Literate.jl/compare/v2.13.3...v2.13.4
diff --git a/Project.toml b/Project.toml
index 83dc6a3..f67de33 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,6 +1,6 @@
 name = "Literate"
 uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
-version = "2.14.1"
+version = "2.14.2"
 
 [deps]
 Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
diff --git a/docs/Manifest.toml b/docs/Manifest.toml
index ebd7cb5..8b5eb8c 100644
--- a/docs/Manifest.toml
+++ b/docs/Manifest.toml
@@ -409,7 +409,7 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 deps = ["Base64", "IOCapture", "JSON", "REPL"]
 path = ".."
 uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
-version = "2.14.1"
+version = "2.14.2"
 
 [[LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]

From 98328722c9c9f78302e58f18a808ad8fd65f066d Mon Sep 17 00:00:00 2001
From: Kipton Barros <kbarros@gmail.com>
Date: Mon, 4 Sep 2023 09:56:05 -0600
Subject: [PATCH 05/16] Remove `@raw html` decorations if target is Jupyter
 notebook (#223)

---
 docs/src/documenter.md | 10 ++++++++++
 src/Literate.jl        |  2 ++
 test/runtests.jl       | 18 ++++++++++++++++++
 3 files changed, 30 insertions(+)

diff --git a/docs/src/documenter.md b/docs/src/documenter.md
index fa1477c..72057b9 100644
--- a/docs/src/documenter.md
+++ b/docs/src/documenter.md
@@ -45,6 +45,16 @@ if we set `documenter = true`:
   \int f dx
   $$
   ```
+- Whereas Documenter requires HTML blocks to be escaped
+  ````
+  ```@raw html
+  <tag>...</tag>
+  ```
+  ````
+  the output to a notebook markdown cell will be raw HTML
+  ```
+  <tag>...</tag>
+  ```
 
 ### [`Literate.script`](@ref):
 - Documenter style `@ref`s and `@id` will be removed. This means that you can use
diff --git a/src/Literate.jl b/src/Literate.jl
index c7fe917..f7c964d 100644
--- a/src/Literate.jl
+++ b/src/Literate.jl
@@ -184,6 +184,8 @@ function replace_default(content, sym;
         # Replace Markdown stdlib math environments
         push!(repls, r"```math(.*?)```"s => s"$$\1$$")
         push!(repls, r"(?<!`)``([^`]+?)``(?!`)" => s"$\1$")
+        # Remove Documenter escape sequence around HTML
+        push!(repls, r"```@raw(\h+)html(.*?)```"s => s"\2")
     else # sym === :jl
         push!(repls, r"^#(!md|!nb|jl) "m => "")    # remove leading #!md, #!nb, and #jl
         push!(repls, r" #(!md|!nb|jl)$"m => "")    # remove trailing #!md, #!nb, and #jl
diff --git a/test/runtests.jl b/test/runtests.jl
index 5970b06..2e5894a 100644
--- a/test/runtests.jl
+++ b/test/runtests.jl
@@ -234,6 +234,11 @@ content = """
         ## Indented comment
     end
 
+    # Some inline html
+    # ```@raw html
+    #   <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>
+    # ```
+
     # Semicolon output supression
     1 + 1;
 
@@ -600,6 +605,11 @@ end end
             end
             ````
 
+            Some inline html
+            ```@raw html
+              <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>
+            ```
+
             Semicolon output supression
 
             ````@example inputfile
@@ -1025,6 +1035,14 @@ end end
                ]
             """,
 
+            """
+               "source": [
+                "Some inline html\\n",
+                "\\n",
+                "  <a href=\\"https://github.com/fredrikekre/Literate.jl\\">Literate.jl</a>"
+               ]
+            """,
+
             """
                "metadata": {
                 "meta": "data"

From b734072227e95aceb0b47ad2b5cfb3cb52759ba5 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Tue, 5 Sep 2023 09:21:18 +0200
Subject: [PATCH 06/16] Fix Documenter error by including all docstrings.

---
 docs/src/reference.md | 5 +++++
 1 file changed, 5 insertions(+)
 create mode 100644 docs/src/reference.md

diff --git a/docs/src/reference.md b/docs/src/reference.md
new file mode 100644
index 0000000..a485102
--- /dev/null
+++ b/docs/src/reference.md
@@ -0,0 +1,5 @@
+# Reference
+
+```@docs
+Literate
+```

From 5047103527ef4bd3379217298c79b658930ef5b7 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Tue, 5 Sep 2023 09:25:27 +0200
Subject: [PATCH 07/16] Set version to 2.15.0.

---
 CHANGELOG.md       | 11 ++++++++++-
 Project.toml       |  2 +-
 docs/Manifest.toml |  2 +-
 3 files changed, 12 insertions(+), 3 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 323cd03..1169d15 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -7,6 +7,12 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 <!-- ## [Unreleased] -->
 
+## [2.15.0] - 2023-09-05
+### Added
+- Documenter style `@raw html` blocks are automatically handled in Jupyter notebook output
+  (similar to how Documenter style ` ```math ` blocks are rewritten to `$$` blocks).
+  ([#222][github-222], [#223][github-223])
+
 ## [2.14.2] - 2023-08-28
 ### Fixed
 - Remove double newline in `Literate.script` output. ([#221][github-221])
@@ -252,8 +258,11 @@ https://discourse.julialang.org/t/ann-literate-jl/10651 for release announcement
 [github-205]: https://github.com/fredrikekre/Literate.jl/pull/205
 [github-219]: https://github.com/fredrikekre/Literate.jl/pull/219
 [github-221]: https://github.com/fredrikekre/Literate.jl/pull/221
+[github-222]: https://github.com/fredrikekre/Literate.jl/issues/222
+[github-223]: https://github.com/fredrikekre/Literate.jl/pull/223
 
-[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.2...HEAD
+[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.0...HEAD
+[2.15.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.2...v2.15.0
 [2.14.2]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.1...v2.14.2
 [2.14.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.0...v2.14.1
 [2.14.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.13.3...v2.14.0
diff --git a/Project.toml b/Project.toml
index f67de33..c8cfde1 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,6 +1,6 @@
 name = "Literate"
 uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
-version = "2.14.2"
+version = "2.15.0"
 
 [deps]
 Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
diff --git a/docs/Manifest.toml b/docs/Manifest.toml
index 8b5eb8c..284392d 100644
--- a/docs/Manifest.toml
+++ b/docs/Manifest.toml
@@ -409,7 +409,7 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 deps = ["Base64", "IOCapture", "JSON", "REPL"]
 path = ".."
 uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
-version = "2.14.2"
+version = "2.15.0"
 
 [[LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]

From 7fc99585f72fc2d54a958aef40e85b3e044e1b49 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Wed, 8 Nov 2023 00:07:35 +0100
Subject: [PATCH 08/16] `Literate.markdown`: fix output directory for images

This patch fixes a bug where `Literate.markdown` with `execute=true`
would (try to) output images in the wrong directory. This only occured
when passing a relative output directory. Fixes #228.
---
 CHANGELOG.md     |  8 +++++++-
 src/Literate.jl  |  3 ++-
 test/runtests.jl | 18 ++++++++++++++++--
 3 files changed, 25 insertions(+), 4 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 1169d15..704b64c 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,7 +5,11 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-<!-- ## [Unreleased] -->
+## [Unreleased]
+### Fixed
+- Fix a bug where `Literate.markdown` with `execute=true` would (try to) output images in
+  the wrong directory. This only occured when passing a relative output directory.
+  ([#228][github-228], [#229][github-229])
 
 ## [2.15.0] - 2023-09-05
 ### Added
@@ -260,6 +264,8 @@ https://discourse.julialang.org/t/ann-literate-jl/10651 for release announcement
 [github-221]: https://github.com/fredrikekre/Literate.jl/pull/221
 [github-222]: https://github.com/fredrikekre/Literate.jl/issues/222
 [github-223]: https://github.com/fredrikekre/Literate.jl/pull/223
+[github-228]: https://github.com/fredrikekre/Literate.jl/issues/228
+[github-229]: https://github.com/fredrikekre/Literate.jl/pull/229
 
 [Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.0...HEAD
 [2.15.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.2...v2.15.0
diff --git a/src/Literate.jl b/src/Literate.jl
index f7c964d..f12440c 100644
--- a/src/Literate.jl
+++ b/src/Literate.jl
@@ -573,7 +573,8 @@ function markdown(inputfile, outputdir=pwd(); config::AbstractDict=Dict(), kwarg
             any(write_line, chunk.lines) && write(iomd, seekstart(iocode))
             if execute
                 cd(config["literate_outputdir"]) do
-                    execute_markdown!(iomd, sb, join(chunk.lines, '\n'), outputdir;
+                    execute_markdown!(iomd, sb, join(chunk.lines, '\n'),
+                                      config["literate_outputdir"];
                                       inputfile=config["literate_inputfile"],
                                       fake_source=config["literate_outputfile"],
                                       flavor=config["flavor"],
diff --git a/test/runtests.jl b/test/runtests.jl
index 2e5894a..d56f304 100644
--- a/test/runtests.jl
+++ b/test/runtests.jl
@@ -891,8 +891,22 @@ end end
             write(f, "1 + 1")
             Literate.markdown(f, outdir)
             @test occursin("file_with_space", read(joinpath(outdir, "file with space.md"), String))
-        end
-    end
+
+            # Relative output directory + image output
+            # https://github.com/fredrikekre/Literate.jl/issues/228
+            write(
+                inputfile,
+                """
+                struct SVG end
+                Base.show(io::IO, mime::MIME"image/svg+xml", ::SVG) = print(io, "issue228")
+                SVG()
+                """,
+            )
+            Literate.markdown(inputfile, relpath(outdir); execute=true,
+                              flavor=Literate.CommonMarkFlavor())
+            @test read(joinpath(outdir, "inputfile-1.svg"), String) == "issue228"
+        end # cd(sandbox)
+    end # mktemp
 end end
 
 @testset "Literate.notebook" begin; Base.CoreLogging.with_logger(Base.CoreLogging.NullLogger()) do

From 9e73bd75f3daafe2975ae157e0c94514e1b3a682 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Wed, 8 Nov 2023 00:12:08 +0100
Subject: [PATCH 09/16] Update doc build deps.

---
 docs/Manifest.toml | 210 ++++++++++++++++++++++++++++++---------------
 1 file changed, 142 insertions(+), 68 deletions(-)

diff --git a/docs/Manifest.toml b/docs/Manifest.toml
index 284392d..6fc9ee0 100644
--- a/docs/Manifest.toml
+++ b/docs/Manifest.toml
@@ -39,15 +39,15 @@ version = "1.16.1+1"
 
 [[CodecZlib]]
 deps = ["TranscodingStreams", "Zlib_jll"]
-git-tree-sha1 = "02aa26a4cf76381be7f66e020a3eddeb27b0a092"
+git-tree-sha1 = "cd67fc487743b2f0fd4380d4cbd3a24660d0eec8"
 uuid = "944b1d66-785c-5afd-91f1-9de20f533193"
-version = "0.7.2"
+version = "0.7.3"
 
 [[ColorSchemes]]
 deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"]
-git-tree-sha1 = "d9a8f86737b665e15a9641ecbac64deef9ce6724"
+git-tree-sha1 = "67c1f244b991cad9b0aa4b7540fb758c2488b129"
 uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
-version = "3.23.0"
+version = "3.24.0"
 
 [[ColorTypes]]
 deps = ["FixedPointNumbers", "Random"]
@@ -75,9 +75,9 @@ version = "0.12.10"
 
 [[Compat]]
 deps = ["UUIDs"]
-git-tree-sha1 = "e460f044ca8b99be31d35fe54fc33a5c33dd8ed7"
+git-tree-sha1 = "8a62af3e248a8c4bad6b32cbbe663ae02275e32c"
 uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
-version = "4.9.0"
+version = "4.10.0"
 weakdeps = ["Dates", "LinearAlgebra"]
 
     [Compat.extensions]
@@ -90,9 +90,9 @@ version = "1.0.5+0"
 
 [[ConcurrentUtilities]]
 deps = ["Serialization", "Sockets"]
-git-tree-sha1 = "5372dbbf8f0bdb8c700db5367132925c0771ef7e"
+git-tree-sha1 = "8cfa272e8bdedfa88b6aefbbca7c19f1befac519"
 uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb"
-version = "2.2.1"
+version = "2.3.0"
 
 [[Contour]]
 git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781"
@@ -127,18 +127,24 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
 version = "0.9.3"
 
 [[Documenter]]
-deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "PrecompileTools", "REPL", "Test", "Unicode"]
-git-tree-sha1 = "6ff1d294ae0cc56ea8a283a1d88dac2b00336ebc"
+deps = ["ANSIColoredPrinters", "AbstractTrees", "Base64", "Dates", "DocStringExtensions", "Downloads", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "MarkdownAST", "Pkg", "PrecompileTools", "REPL", "RegistryInstances", "SHA", "Test", "Unicode"]
+git-tree-sha1 = "ad7d14c9ab91014ed8837d79c09aa6af83b965d7"
 repo-rev = "master"
 repo-url = "https://github.com/JuliaDocs/Documenter.jl.git"
 uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-version = "0.28.0-DEV"
+version = "1.1.2"
 
 [[Downloads]]
 deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
 uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
 version = "1.6.0"
 
+[[EpollShim_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "8e9441ee83492030ace98f9789a654a6d0b1f643"
+uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43"
+version = "0.0.20230411+0"
+
 [[ExceptionUnwrapping]]
 deps = ["Test"]
 git-tree-sha1 = "e90caa41f5a86296e014e148ee061bd6c3edec96"
@@ -158,10 +164,10 @@ uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
 version = "0.4.1"
 
 [[FFMPEG_jll]]
-deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
-git-tree-sha1 = "74faea50c1d007c85837327f6775bea60b5492dd"
+deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
+git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e"
 uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5"
-version = "4.4.2+2"
+version = "4.4.4+1"
 
 [[FileWatching]]
 uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee"
@@ -204,15 +210,15 @@ version = "3.3.8+0"
 
 [[GR]]
 deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Preferences", "Printf", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "UUIDs", "p7zip_jll"]
-git-tree-sha1 = "d73afa4a2bb9de56077242d98cf763074ab9a970"
+git-tree-sha1 = "27442171f28c952804dede8ff72828a96f2bfc1f"
 uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
-version = "0.72.9"
+version = "0.72.10"
 
 [[GR_jll]]
 deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"]
-git-tree-sha1 = "1596bab77f4f073a14c62424283e7ebff3072eca"
+git-tree-sha1 = "025d171a2847f616becc0f84c8dc62fe18f0f6dd"
 uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
-version = "0.72.9+1"
+version = "0.72.10+0"
 
 [[Gettext_jll]]
 deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
@@ -221,10 +227,10 @@ uuid = "78b55507-aeef-58d4-861c-77aaff3498b1"
 version = "0.21.0+0"
 
 [[Glib_jll]]
-deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "d3b3624125c1474292d0d8ed0f65554ac37ddb23"
+deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
+git-tree-sha1 = "e94c92c7bf4819685eb80186d51c43e71d4afa17"
 uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
-version = "2.74.0+2"
+version = "2.76.5+0"
 
 [[Graphite2_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -239,9 +245,9 @@ version = "1.0.2"
 
 [[HTTP]]
 deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"]
-git-tree-sha1 = "cb56ccdd481c0dd7f975ad2b3b62d9eda088f7e2"
+git-tree-sha1 = "5eab648309e2e060198b45820af1a37182de3cce"
 uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
-version = "1.9.14"
+version = "1.10.0"
 
 [[HarfBuzz_jll]]
 deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"]
@@ -266,9 +272,9 @@ version = "0.2.2"
 
 [[JLFzf]]
 deps = ["Pipe", "REPL", "Random", "fzf_jll"]
-git-tree-sha1 = "f377670cda23b6b7c1c0b3893e37451c5c1a2185"
+git-tree-sha1 = "9fb0b890adab1c0a4a475d4210d51f228bfc250d"
 uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c"
-version = "0.1.5"
+version = "0.1.6"
 
 [[JLLWrappers]]
 deps = ["Artifacts", "Preferences"]
@@ -313,9 +319,9 @@ uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
 version = "2.10.1+0"
 
 [[LaTeXStrings]]
-git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996"
+git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
 uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
-version = "1.3.0"
+version = "1.3.1"
 
 [[Latexify]]
 deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"]
@@ -331,6 +337,11 @@ version = "0.16.1"
     DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0"
     SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8"
 
+[[LazilyInitializedFields]]
+git-tree-sha1 = "410fe4739a4b092f2ffe36fcb0dcc3ab12648ce1"
+uuid = "0e77f7df-68c5-4e49-93ce-4cd80f5598bf"
+version = "1.2.1"
+
 [[LibCURL]]
 deps = ["LibCURL_jll", "MozillaCACerts_jll"]
 uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
@@ -378,10 +389,10 @@ uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
 version = "1.42.0+0"
 
 [[Libiconv_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "c7cb1f5d892775ba13767a87c7ada0b980ea0a71"
+deps = ["Artifacts", "JLLWrappers", "Libdl"]
+git-tree-sha1 = "f9557a255370125b405568f9767d6d195822a175"
 uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
-version = "1.16.1+2"
+version = "1.17.0+0"
 
 [[Libmount_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -432,9 +443,9 @@ uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
 
 [[LoggingExtras]]
 deps = ["Dates", "Logging"]
-git-tree-sha1 = "a03c77519ab45eb9a34d3cfe2ca223d79c064323"
+git-tree-sha1 = "c1dd6d7978c12545b4179fb6153b9250c96b0075"
 uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36"
-version = "1.0.1"
+version = "1.0.3"
 
 [[MacroTools]]
 deps = ["Markdown", "Random"]
@@ -448,9 +459,9 @@ uuid = "d6f4376e-aef5-505a-96c1-9c027394607a"
 
 [[MarkdownAST]]
 deps = ["AbstractTrees", "Markdown"]
-git-tree-sha1 = "e8513266815200c0c8f522d6d44ffb5e9b366ae4"
+git-tree-sha1 = "465a70f0fc7d443a00dcdc3267a497397b8a3899"
 uuid = "d0879d2d-cac2-40c8-9cee-1863dc0c7391"
-version = "0.1.1"
+version = "0.1.2"
 
 [[MbedTLS]]
 deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"]
@@ -515,9 +526,9 @@ version = "1.4.1"
 
 [[OpenSSL_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl"]
-git-tree-sha1 = "bbb5c2115d63c2f1451cb70e5ef75e8fe4707019"
+git-tree-sha1 = "cc6e1927ac521b659af340e0ca45828a3ffc748f"
 uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
-version = "1.1.22+0"
+version = "3.0.12+0"
 
 [[Opus_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -571,9 +582,9 @@ version = "1.3.5"
 
 [[Plots]]
 deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
-git-tree-sha1 = "9f8675a55b37a70aa23177ec110f6e3f4dd68466"
+git-tree-sha1 = "ccee59c6e48e6f2edf8a5b64dc817b6729f99eb5"
 uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
-version = "1.38.17"
+version = "1.39.0"
 
     [Plots.extensions]
     FileIOExt = "FileIO"
@@ -597,19 +608,19 @@ version = "1.2.0"
 
 [[Preferences]]
 deps = ["TOML"]
-git-tree-sha1 = "7eb1686b4f04b82f96ed7a4ea5890a4f0c7a09f1"
+git-tree-sha1 = "00805cd429dcb4870060ff49ef443486c262e38e"
 uuid = "21216c6a-2e73-6563-6e65-726566657250"
-version = "1.4.0"
+version = "1.4.1"
 
 [[Printf]]
 deps = ["Unicode"]
 uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
 
 [[Qt6Base_jll]]
-deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"]
-git-tree-sha1 = "364898e8f13f7eaaceec55fd3d08680498c0aa6e"
+deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"]
+git-tree-sha1 = "37b7bb7aabf9a085e0044307e1717436117f2b3b"
 uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56"
-version = "6.4.2+3"
+version = "6.5.3+1"
 
 [[REPL]]
 deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
@@ -636,11 +647,17 @@ git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b"
 uuid = "189a3867-3050-52da-a836-e630ba90ab69"
 version = "1.2.2"
 
+[[RegistryInstances]]
+deps = ["LazilyInitializedFields", "Pkg", "TOML", "Tar"]
+git-tree-sha1 = "ffd19052caf598b8653b99404058fce14828be51"
+uuid = "2792f1a3-b283-48e8-9a74-f99dce5104f3"
+version = "0.1.0"
+
 [[RelocatableFolders]]
 deps = ["SHA", "Scratch"]
-git-tree-sha1 = "90bc7a7c96410424509e4263e277e43250c05691"
+git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864"
 uuid = "05181044-ff0b-4ac5-8273-598c1e38db00"
-version = "1.0.0"
+version = "1.0.1"
 
 [[Requires]]
 deps = ["UUIDs"]
@@ -654,9 +671,9 @@ version = "0.7.0"
 
 [[Scratch]]
 deps = ["Dates"]
-git-tree-sha1 = "30449ee12237627992a99d5e30ae63e4d78cd24a"
+git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386"
 uuid = "6c6a2e73-6563-6170-7368-637461726353"
-version = "1.2.0"
+version = "1.2.1"
 
 [[Serialization]]
 uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
@@ -677,9 +694,9 @@ uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
 
 [[SortingAlgorithms]]
 deps = ["DataStructures"]
-git-tree-sha1 = "c60ec5c62180f27efea3ba2908480f8055e17cee"
+git-tree-sha1 = "5165dfb9fd131cf0c6957a3a7605dede376e7b63"
 uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
-version = "1.1.1"
+version = "1.2.0"
 
 [[SparseArrays]]
 deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"]
@@ -692,15 +709,15 @@ version = "1.9.0"
 
 [[StatsAPI]]
 deps = ["LinearAlgebra"]
-git-tree-sha1 = "45a7769a04a3cf80da1c1c7c60caf932e6f4c9f7"
+git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed"
 uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
-version = "1.6.0"
+version = "1.7.0"
 
 [[StatsBase]]
 deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
-git-tree-sha1 = "75ebe04c5bed70b91614d684259b661c9e6274a4"
+git-tree-sha1 = "1d77abd07f617c4868c33d4f5b9e1dbb2643c9cf"
 uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
-version = "0.34.0"
+version = "0.34.2"
 
 [[SuiteSparse_jll]]
 deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"]
@@ -728,15 +745,18 @@ deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
 uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [[TranscodingStreams]]
-deps = ["Random", "Test"]
-git-tree-sha1 = "9a6ae7ed916312b41236fcef7e0af564ef934769"
+git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84"
 uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
-version = "0.9.13"
+version = "0.10.2"
+weakdeps = ["Random", "Test"]
+
+    [TranscodingStreams.extensions]
+    TestExt = ["Test", "Random"]
 
 [[URIs]]
-git-tree-sha1 = "b7a5e99f24892b6824a954199a45e9ffcc1c70f0"
+git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b"
 uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
-version = "1.5.0"
+version = "1.5.1"
 
 [[UUIDs]]
 deps = ["Random", "SHA"]
@@ -776,11 +796,17 @@ git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78"
 uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"
 version = "0.2.0"
 
+[[Vulkan_Loader_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"]
+git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59"
+uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c"
+version = "1.3.243+0"
+
 [[Wayland_jll]]
-deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"]
-git-tree-sha1 = "ed8d92d9774b077c53e1da50fd81a36af3744c1c"
+deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"]
+git-tree-sha1 = "7558e29847e99bc3f04d6569e82d0f5c54460703"
 uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89"
-version = "1.21.0+0"
+version = "1.21.0+1"
 
 [[Wayland_protocols_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -789,10 +815,10 @@ uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91"
 version = "1.25.0+0"
 
 [[XML2_jll]]
-deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
-git-tree-sha1 = "93c41695bc1c08c46c5899f4fe06d6ead504bb73"
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"]
+git-tree-sha1 = "24b81b59bd35b3c42ab84fa589086e19be919916"
 uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
-version = "2.10.3+0"
+version = "2.11.5+0"
 
 [[XSLT_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]
@@ -806,6 +832,18 @@ git-tree-sha1 = "cf2c7de82431ca6f39250d2fc4aacd0daa1675c0"
 uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800"
 version = "5.4.4+0"
 
+[[Xorg_libICE_jll]]
+deps = ["Libdl", "Pkg"]
+git-tree-sha1 = "e5becd4411063bdcac16be8b66fc2f9f6f1e8fe5"
+uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c"
+version = "1.0.10+1"
+
+[[Xorg_libSM_jll]]
+deps = ["Libdl", "Pkg", "Xorg_libICE_jll"]
+git-tree-sha1 = "4a9d9e4c180e1e8119b5ffc224a7b59d3a7f7e18"
+uuid = "c834827a-8449-5923-a945-d239c165b7dd"
+version = "1.2.3+0"
+
 [[Xorg_libX11_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
 git-tree-sha1 = "afead5aba5aa507ad5a3bf01f58f82c8d1403495"
@@ -884,6 +922,12 @@ git-tree-sha1 = "730eeca102434283c50ccf7d1ecdadf521a765a4"
 uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a"
 version = "1.1.2+0"
 
+[[Xorg_xcb_util_cursor_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"]
+git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd"
+uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43"
+version = "0.1.4+0"
+
 [[Xorg_xcb_util_image_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"]
 git-tree-sha1 = "0fab0a40349ba1cba2c1da699243396ff8e94b97"
@@ -943,11 +987,23 @@ git-tree-sha1 = "49ce682769cd5de6c72dcf1b94ed7790cd08974c"
 uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
 version = "1.5.5+0"
 
+[[eudev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"]
+git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba"
+uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06"
+version = "3.2.9+0"
+
 [[fzf_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
-git-tree-sha1 = "868e669ccb12ba16eaf50cb2957ee2ff61261c56"
+git-tree-sha1 = "47cf33e62e138b920039e8ff9f9841aafe1b733e"
 uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09"
-version = "0.29.0+0"
+version = "0.35.1+0"
+
+[[gperf_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "3516a5630f741c9eecb3720b1ec9d8edc3ecc033"
+uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70"
+version = "3.1.1+0"
 
 [[libaom_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@@ -966,12 +1022,24 @@ deps = ["Artifacts", "Libdl"]
 uuid = "8e850b90-86db-534c-a0d3-1478176c7d93"
 version = "5.8.0+0"
 
+[[libevdev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22"
+uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc"
+version = "1.11.0+0"
+
 [[libfdk_aac_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
 git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55"
 uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280"
 version = "2.0.2+0"
 
+[[libinput_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"]
+git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce"
+uuid = "36db933b-70db-51c0-b978-0f229ee0e533"
+version = "1.18.0+0"
+
 [[libpng_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
 git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c"
@@ -984,6 +1052,12 @@ git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c"
 uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
 version = "1.3.7+1"
 
+[[mtdev_jll]]
+deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
+git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11"
+uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e"
+version = "1.1.6+0"
+
 [[nghttp2_jll]]
 deps = ["Artifacts", "Libdl"]
 uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
@@ -1008,6 +1082,6 @@ version = "3.5.0+0"
 
 [[xkbcommon_jll]]
 deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"]
-git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a"
+git-tree-sha1 = "9c304562909ab2bab0262639bd4f444d7bc2be37"
 uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd"
-version = "1.4.1+0"
+version = "1.4.1+1"

From 66d15cb3601da2bf1e92c9d12cdde3594bda42fe Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Wed, 8 Nov 2023 00:11:15 +0100
Subject: [PATCH 10/16] Set version to 2.15.1.

---
 CHANGELOG.md       | 7 +++++--
 Project.toml       | 2 +-
 docs/Manifest.toml | 2 +-
 3 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 704b64c..99bb761 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,7 +5,9 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [Unreleased]
+<!-- ## [Unreleased] -->
+
+## [2.15.1] - 2023-11-08
 ### Fixed
 - Fix a bug where `Literate.markdown` with `execute=true` would (try to) output images in
   the wrong directory. This only occured when passing a relative output directory.
@@ -267,7 +269,8 @@ https://discourse.julialang.org/t/ann-literate-jl/10651 for release announcement
 [github-228]: https://github.com/fredrikekre/Literate.jl/issues/228
 [github-229]: https://github.com/fredrikekre/Literate.jl/pull/229
 
-[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.0...HEAD
+[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.1...HEAD
+[2.15.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.0...v2.15.1
 [2.15.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.2...v2.15.0
 [2.14.2]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.1...v2.14.2
 [2.14.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.0...v2.14.1
diff --git a/Project.toml b/Project.toml
index c8cfde1..b861fdf 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,6 +1,6 @@
 name = "Literate"
 uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
-version = "2.15.0"
+version = "2.15.1"
 
 [deps]
 Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
diff --git a/docs/Manifest.toml b/docs/Manifest.toml
index 6fc9ee0..d43c01f 100644
--- a/docs/Manifest.toml
+++ b/docs/Manifest.toml
@@ -420,7 +420,7 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 deps = ["Base64", "IOCapture", "JSON", "REPL"]
 path = ".."
 uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
-version = "2.15.0"
+version = "2.15.1"
 
 [[LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]

From b48b504de4fe5c59d37f3d8e34879956982f26f3 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Wed, 8 Nov 2023 00:43:10 +0100
Subject: [PATCH 11/16] Add compat for stdlibs.

---
 Project.toml | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/Project.toml b/Project.toml
index b861fdf..2599739 100644
--- a/Project.toml
+++ b/Project.toml
@@ -9,8 +9,10 @@ JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 REPL = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [compat]
+Base64 = "<0.0.1, 1"
 IOCapture = "0.2"
 JSON = "0.18, 0.19, 0.20, 0.21, 1"
+REPL = "<0.0.1, 1"
 julia = "1"
 
 [extras]

From a4099cbec6b705f5c5ad51bad233f8696b3ee986 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Wed, 8 Nov 2023 01:12:53 +0100
Subject: [PATCH 12/16] Add dependabot.yml and update some actions.

---
 .github/dependabot.yml   | 7 +++++++
 .github/workflows/ci.yml | 6 +++---
 2 files changed, 10 insertions(+), 3 deletions(-)
 create mode 100644 .github/dependabot.yml

diff --git a/.github/dependabot.yml b/.github/dependabot.yml
new file mode 100644
index 0000000..d60f070
--- /dev/null
+++ b/.github/dependabot.yml
@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "monthly"
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 315c305..1255c66 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -26,7 +26,7 @@ jobs:
           - os: macOS-latest
             version: '1'
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@v1
         with:
           version: ${{ matrix.version }}
@@ -39,14 +39,14 @@ jobs:
           key: .julia-test-${{ matrix.version }}-${{ hashFiles('Project.toml') }}
       - uses: julia-actions/julia-runtest@v1
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v1
+      - uses: codecov/codecov-action@v3
         with:
           file: lcov.info
   docs:
     name: Documentation
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
       - uses: julia-actions/setup-julia@v1
         with:
           version: '1'

From 51be2c37aab9598baaf75c86d3a2a44524caf8bf Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Wed, 8 Nov 2023 02:55:22 +0100
Subject: [PATCH 13/16] Update julia compat from [1.0.0-2) to [1.6.0-2).

---
 .github/workflows/ci.yml | 2 +-
 CHANGELOG.md             | 6 +++++-
 Project.toml             | 6 +++---
 3 files changed, 9 insertions(+), 5 deletions(-)

diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
index 1255c66..51a7380 100644
--- a/.github/workflows/ci.yml
+++ b/.github/workflows/ci.yml
@@ -15,7 +15,7 @@ jobs:
     strategy:
       matrix:
         version:
-          - '1.0'
+          - '1.6'
           - '1'
           - 'nightly'
         os:
diff --git a/CHANGELOG.md b/CHANGELOG.md
index 99bb761..b3261c3 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,7 +5,10 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-<!-- ## [Unreleased] -->
+## [Unreleased]
+### Changed
+- The minimum Julia version requirement for Literate >= 2.16.0 is now 1.6.0 (from 1.0.0).
+  ([#230][github-230])
 
 ## [2.15.1] - 2023-11-08
 ### Fixed
@@ -268,6 +271,7 @@ https://discourse.julialang.org/t/ann-literate-jl/10651 for release announcement
 [github-223]: https://github.com/fredrikekre/Literate.jl/pull/223
 [github-228]: https://github.com/fredrikekre/Literate.jl/issues/228
 [github-229]: https://github.com/fredrikekre/Literate.jl/pull/229
+[github-230]: https://github.com/fredrikekre/Literate.jl/pull/230
 
 [Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.1...HEAD
 [2.15.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.0...v2.15.1
diff --git a/Project.toml b/Project.toml
index 2599739..9c252f4 100644
--- a/Project.toml
+++ b/Project.toml
@@ -9,11 +9,11 @@ JSON = "682c06a0-de6a-54ab-a142-c8b1cf79cde6"
 REPL = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
 
 [compat]
-Base64 = "<0.0.1, 1"
+Base64 = "1"
 IOCapture = "0.2"
 JSON = "0.18, 0.19, 0.20, 0.21, 1"
-REPL = "<0.0.1, 1"
-julia = "1"
+REPL = "1"
+julia = "1.6"
 
 [extras]
 DisplayAs = "0b91fe84-8a4c-11e9-3e1d-67c38462b6d6"

From 81877fe73ed3534ebfbf5c63c78e0c917d9ea556 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Wed, 8 Nov 2023 02:30:51 +0100
Subject: [PATCH 14/16] Add soft scoping rule capabilities

This patch enables "soft" scoping rules (see e.g.
https://github.com/JuliaLang/SoftGlobalScope.jl) for code execution
(markdown and notebook output). This is enabled by default for Jupyter
notebook output (to mimic how the IJulia kernel works), and disabled
otherwise. Soft scope rules can be enabled/disabled with the `softscope
:: Bool` configuration variable. Fixes #227.
---
 CHANGELOG.md     |  7 +++++++
 src/Literate.jl  | 24 ++++++++++++++++-------
 test/runtests.jl | 50 ++++++++++++++++++++++++++++++++++++++++++++++--
 3 files changed, 72 insertions(+), 9 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index b3261c3..680b47f 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -6,6 +6,12 @@ The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
 ## [Unreleased]
+### Added
+- "Soft" scoping rules (see e.g. https://github.com/JuliaLang/SoftGlobalScope.jl) are now
+  available for code execution (markdown and notebook output). This is enabled by default
+  for Jupyter notebook output (to mimic how the IJulia kernel works), and disabled
+  otherwise. Soft scope rules can be enabled/disabled with the `softscope :: Bool`
+  configuration variable. ([#227][github-227], [#230][github-230])
 ### Changed
 - The minimum Julia version requirement for Literate >= 2.16.0 is now 1.6.0 (from 1.0.0).
   ([#230][github-230])
@@ -269,6 +275,7 @@ https://discourse.julialang.org/t/ann-literate-jl/10651 for release announcement
 [github-221]: https://github.com/fredrikekre/Literate.jl/pull/221
 [github-222]: https://github.com/fredrikekre/Literate.jl/issues/222
 [github-223]: https://github.com/fredrikekre/Literate.jl/pull/223
+[github-227]: https://github.com/fredrikekre/Literate.jl/issues/227
 [github-228]: https://github.com/fredrikekre/Literate.jl/issues/228
 [github-229]: https://github.com/fredrikekre/Literate.jl/pull/229
 [github-230]: https://github.com/fredrikekre/Literate.jl/pull/230
diff --git a/src/Literate.jl b/src/Literate.jl
index f12440c..071fa17 100644
--- a/src/Literate.jl
+++ b/src/Literate.jl
@@ -312,6 +312,7 @@ function create_configuration(inputfile; user_config, user_kwargs, type=nothing)
     cfg["flavor"] = type === (:md) ? DocumenterFlavor() : DefaultFlavor()
     cfg["credit"] = true
     cfg["mdstrings"] = false
+    cfg["softscope"] = type === (:nb) ? true : false # on for Jupyter notebooks
     cfg["keep_comments"] = false
     cfg["execute"] = type === :md ? false : true
     cfg["codefence"] = get(user_config, "flavor", cfg["flavor"]) isa DocumenterFlavor &&
@@ -408,6 +409,8 @@ Available options:
 - `devurl` (default: `"dev"`): URL for "in-development" docs, see [Documenter docs]
   (https://juliadocs.github.io/Documenter.jl/). Unused if `repo_root_url`/
   `nbviewer_root_url`/`binder_root_url` are set.
+- `softscope` (default: `true` for Jupyter notebooks, `false` otherwise): enable/disable
+  "soft" scoping rules when executing, see e.g. https://github.com/JuliaLang/SoftGlobalScope.jl.
 - `repo_root_url`: URL to the root of the repository. Determined automatically on Travis CI,
   GitHub Actions and GitLab CI. Used for `@__REPO_ROOT_URL__`.
 - `nbviewer_root_url`: URL to the root of the repository as seen on nbviewer. Determined
@@ -580,6 +583,7 @@ function markdown(inputfile, outputdir=pwd(); config::AbstractDict=Dict(), kwarg
                                       flavor=config["flavor"],
                                       image_formats=config["image_formats"],
                                       file_prefix="$(config["name"])-$(chunknum)",
+                                      softscope=config["softscope"],
                     )
                 end
             end
@@ -597,9 +601,10 @@ end
 
 function execute_markdown!(io::IO, sb::Module, block::String, outputdir;
                            inputfile::String, fake_source::String,
-                           flavor::AbstractFlavor, image_formats::Vector, file_prefix::String)
+                           flavor::AbstractFlavor, image_formats::Vector, file_prefix::String,
+                           softscope::Bool)
     # TODO: Deal with explicit display(...) calls
-    r, str, _ = execute_block(sb, block; inputfile=inputfile, fake_source=fake_source)
+    r, str, _ = execute_block(sb, block; inputfile=inputfile, fake_source=fake_source, softscope=softscope)
     # issue #101: consecutive codefenced blocks need newline
     # issue #144: quadruple backticks allow for triple backticks in the output
     plain_fence = "\n````\n" =>  "\n````"
@@ -734,7 +739,8 @@ function jupyter_notebook(chunks, config)
         try
             cd(config["literate_outputdir"]) do
                 nb = execute_notebook(nb; inputfile=config["literate_inputfile"],
-                                          fake_source=config["literate_outputfile"])
+                                          fake_source=config["literate_outputfile"],
+                                          softscope=config["softscope"])
             end
         catch err
             @error "error when executing notebook based on input file: " *
@@ -745,7 +751,7 @@ function jupyter_notebook(chunks, config)
     return nb
 end
 
-function execute_notebook(nb; inputfile::String, fake_source::String)
+function execute_notebook(nb; inputfile::String, fake_source::String, softscope::Bool)
     sb = sandbox()
     execution_count = 0
     for cell in nb["cells"]
@@ -753,7 +759,7 @@ function execute_notebook(nb; inputfile::String, fake_source::String)
         execution_count += 1
         cell["execution_count"] = execution_count
         block = join(cell["source"])
-        r, str, display_dicts = execute_block(sb, block; inputfile=inputfile, fake_source=fake_source)
+        r, str, display_dicts = execute_block(sb, block; inputfile=inputfile, fake_source=fake_source, softscope=softscope)
 
         # str should go into stream
         if !isempty(str)
@@ -835,7 +841,7 @@ function Base.display(ld::LiterateDisplay, mime::MIME, x)
 end
 
 # Execute a code-block in a module and capture stdout/stderr and the result
-function execute_block(sb::Module, block::String; inputfile::String, fake_source::String)
+function execute_block(sb::Module, block::String; inputfile::String, fake_source::String, softscope::Bool)
     @debug """execute_block($sb, block)
     ```
     $(block)
@@ -851,7 +857,11 @@ function execute_block(sb::Module, block::String; inputfile::String, fake_source
     # `rethrow = Union{}` means that we try-catch all the exceptions thrown in the do-block
     # and return them via the return value (they get handled below).
     c = IOCapture.capture(rethrow = Union{}) do
-        include_string(sb, block, fake_source)
+        if softscope
+            include_string(REPL.softscope, sb, block, fake_source)
+        else
+            include_string(sb, block, fake_source)
+        end
     end
     popdisplay(disp) # IOCapture.capture has a try-catch so should always end up here
     if c.error
diff --git a/test/runtests.jl b/test/runtests.jl
index d56f304..41a61e2 100644
--- a/test/runtests.jl
+++ b/test/runtests.jl
@@ -905,6 +905,27 @@ end end
             Literate.markdown(inputfile, relpath(outdir); execute=true,
                               flavor=Literate.CommonMarkFlavor())
             @test read(joinpath(outdir, "inputfile-1.svg"), String) == "issue228"
+
+            # Softscope
+            write(
+                inputfile,
+                """
+                ret = 0
+                for k = 1:10
+                    ret += k
+                end
+                println("ret = ", ret)
+                """
+            )
+            Literate.markdown(inputfile, outdir; execute=true, softscope=true)
+            @test occursin("ret = 55", read(joinpath(outdir, "inputfile.md"), String))
+            ## Disabled softscope
+            try
+                Literate.markdown(inputfile, outdir; execute=true, softscope=false)
+                error("unreachable")
+            catch err
+                @test occursin(r"`?ret`? not defined", sprint(Base.showerror, err))
+            end
         end # cd(sandbox)
     end # mktemp
 end end
@@ -1319,8 +1340,33 @@ end end
             @test keys(cellout[1]["data"]) == Set(("text/latex",))
             @test cellout[1]["data"]["text/latex"] == "DF(4) as text/latex"
             @test !haskey(cellout[1], "execution_count")
-        end
-    end
+
+            # Softscope
+            # TODO: Windows CI says here, but no longer: The input file that have been used
+            #       above multiple times without problem now gives
+            #       "SystemError: opening file: Invalid argument" for some reason...
+            new_inputfile = "inputfile2.jl"
+            write(
+                new_inputfile,
+                """
+                ret = 0
+                for k = 1:10
+                    ret += k
+                end
+                println("ret = ", ret)
+                """
+            )
+            Literate.notebook(new_inputfile, outdir)
+            @test occursin("ret = 55", read(joinpath(outdir, "inputfile2.ipynb"), String))
+            ## Disabled softscope
+            try
+                Literate.notebook(new_inputfile, outdir; softscope=false)
+                error("unreachable")
+            catch err
+                @test occursin(r"`?ret`? not defined", sprint(Base.showerror, err))
+            end
+        end # cd(sandbox)
+    end # mktempdir
 end end
 
 @testset "Configuration" begin; Base.CoreLogging.with_logger(Base.CoreLogging.NullLogger()) do

From 07a1fed75f297d998799e9676eb3e2ae2fa8f183 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Wed, 8 Nov 2023 03:13:08 +0100
Subject: [PATCH 15/16] Set version to 2.16.0.

---
 CHANGELOG.md       | 7 +++++--
 Project.toml       | 2 +-
 docs/Manifest.toml | 2 +-
 3 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/CHANGELOG.md b/CHANGELOG.md
index 680b47f..d004c61 100644
--- a/CHANGELOG.md
+++ b/CHANGELOG.md
@@ -5,7 +5,9 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [Unreleased]
+<!-- ## [Unreleased] -->
+
+## [2.16.0] - 2023-11-08
 ### Added
 - "Soft" scoping rules (see e.g. https://github.com/JuliaLang/SoftGlobalScope.jl) are now
   available for code execution (markdown and notebook output). This is enabled by default
@@ -280,7 +282,8 @@ https://discourse.julialang.org/t/ann-literate-jl/10651 for release announcement
 [github-229]: https://github.com/fredrikekre/Literate.jl/pull/229
 [github-230]: https://github.com/fredrikekre/Literate.jl/pull/230
 
-[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.1...HEAD
+[Unreleased]: https://github.com/fredrikekre/Literate.jl/compare/v2.16.0...HEAD
+[2.16.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.1...v2.16.0
 [2.15.1]: https://github.com/fredrikekre/Literate.jl/compare/v2.15.0...v2.15.1
 [2.15.0]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.2...v2.15.0
 [2.14.2]: https://github.com/fredrikekre/Literate.jl/compare/v2.14.1...v2.14.2
diff --git a/Project.toml b/Project.toml
index 9c252f4..c869e9e 100644
--- a/Project.toml
+++ b/Project.toml
@@ -1,6 +1,6 @@
 name = "Literate"
 uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
-version = "2.15.1"
+version = "2.16.0"
 
 [deps]
 Base64 = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
diff --git a/docs/Manifest.toml b/docs/Manifest.toml
index d43c01f..16e04cc 100644
--- a/docs/Manifest.toml
+++ b/docs/Manifest.toml
@@ -420,7 +420,7 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 deps = ["Base64", "IOCapture", "JSON", "REPL"]
 path = ".."
 uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
-version = "2.15.1"
+version = "2.16.0"
 
 [[LogExpFunctions]]
 deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"]

From 433efde28949871482c0e495369b20e0604a53b1 Mon Sep 17 00:00:00 2001
From: Fredrik Ekre <ekrefredrik@gmail.com>
Date: Wed, 8 Nov 2023 10:24:51 +0100
Subject: [PATCH 16/16] Add TagBot config for changelogs.

---
 .github/workflows/TagBot.yml | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/.github/workflows/TagBot.yml b/.github/workflows/TagBot.yml
index f49313b..6e27469 100644
--- a/.github/workflows/TagBot.yml
+++ b/.github/workflows/TagBot.yml
@@ -11,5 +11,15 @@ jobs:
     steps:
       - uses: JuliaRegistries/TagBot@v1
         with:
+          changelog: |
+            {% if custom %}
+            {{ custom }}
+            {% endif %}
+
+            See [`CHANGELOG.md`](https://github.com/fredrikekre/Literate.jl/blob/master/CHANGELOG.md) for notable changes.
+
+            {% if previous_release %}
+            [Diff since {{ previous_release }}]({{ compare_url }})
+            {% endif %}
           token: ${{ secrets.GITHUB_TOKEN }}
           ssh: ${{ secrets.DOCUMENTER_KEY }}