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Literate.jl
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Merge branch 'master' into master

pull/145/head
Fredrik Ekre 4 years ago committed by GitHub
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11 changed files with 213 additions and 171 deletions
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  1. 1
      .github/workflows/ci.yml
  2. 335
      docs/Manifest.toml
  3. 3
      docs/make.jl
  4. 2
      docs/src/customprocessing.md
  5. 4
      docs/src/fileformat.md
  6. 4
      docs/src/index.md
  7. 6
      docs/src/outputformats.md
  8. 2
      docs/src/tips.md
  9. 2
      examples/example.jl
  10. 20
      src/Literate.jl
  11. 5
      test/runtests.jl

1
.github/workflows/ci.yml
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@ -50,4 +50,5 @@ jobs:
env: env:
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
GKSwstype: '100'
run: julia --project=docs --color=yes docs/make.jl run: julia --project=docs --color=yes docs/make.jl

335
docs/Manifest.toml
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@ -2,15 +2,15 @@
[[Adapt]] [[Adapt]]
deps = ["LinearAlgebra"] deps = ["LinearAlgebra"]
git-tree-sha1 = "ffcfa2d345aaee0ef3d8346a073d5dd03c983ebe" git-tree-sha1 = "84918055d15b3114ede17ac6a7182f68870c16f7"
uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e"
version = "3.2.0" version = "3.3.1"
[[ArgTools]]
uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f"
[[Artifacts]] [[Artifacts]]
deps = ["Pkg"]
git-tree-sha1 = "c30985d8821e0cd73870b17b0ed0ce6dc44cb744"
uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33"
version = "1.3.0"
[[Base64]] [[Base64]]
uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f"
@ -29,33 +29,31 @@ version = "1.16.0+6"
[[ColorSchemes]] [[ColorSchemes]]
deps = ["ColorTypes", "Colors", "FixedPointNumbers", "Random", "StaticArrays"] deps = ["ColorTypes", "Colors", "FixedPointNumbers", "Random", "StaticArrays"]
git-tree-sha1 = "3141757b5832ee7a0386db87997ee5a23ff20f4d" git-tree-sha1 = "c8fd01e4b736013bc61b704871d20503b33ea402"
uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4"
version = "3.10.2" version = "3.12.1"
[[ColorTypes]] [[ColorTypes]]
deps = ["FixedPointNumbers", "Random"] deps = ["FixedPointNumbers", "Random"]
git-tree-sha1 = "32a2b8af383f11cbb65803883837a149d10dfe8a" git-tree-sha1 = "024fe24d83e4a5bf5fc80501a314ce0d1aa35597"
uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f"
version = "0.10.12" version = "0.11.0"
[[Colors]] [[Colors]]
deps = ["ColorTypes", "FixedPointNumbers", "InteractiveUtils", "Reexport"] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"]
git-tree-sha1 = "ac5f2213e56ed8a34a3dd2f681f4df1166b34929" git-tree-sha1 = "417b0ed7b8b838aa6ca0a87aadf1bb9eb111ce40"
uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581"
version = "0.12.6" version = "0.12.8"
[[Compat]] [[Compat]]
deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"]
git-tree-sha1 = "919c7f3151e79ff196add81d7f4e45d91bbf420b" git-tree-sha1 = "e4e2b39db08f967cc1360951f01e8a75ec441cab"
uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20"
version = "3.25.0" version = "3.30.0"
[[CompilerSupportLibraries_jll]] [[CompilerSupportLibraries_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "Libdl"]
git-tree-sha1 = "8e695f735fca77e9708e795eda62afdb869cbb70"
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "0.3.4+0"
[[Contour]] [[Contour]]
deps = ["StaticArrays"] deps = ["StaticArrays"]
@ -92,18 +90,20 @@ deps = ["Random", "Serialization", "Sockets"]
uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b"
[[DocStringExtensions]] [[DocStringExtensions]]
deps = ["LibGit2", "Markdown", "Pkg", "Test"] deps = ["LibGit2"]
git-tree-sha1 = "50ddf44c53698f5e784bbebb3f4b21c5807401b1" git-tree-sha1 = "a32185f5428d3986f47c2ab78b1f216d5e6cc96f"
uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae"
version = "0.8.3" version = "0.8.5"
[[Documenter]] [[Documenter]]
deps = ["Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"] deps = ["Base64", "Dates", "DocStringExtensions", "IOCapture", "InteractiveUtils", "JSON", "LibGit2", "Logging", "Markdown", "REPL", "Test", "Unicode"]
git-tree-sha1 = "79536d7359b324b20afef3d32baaf8e3e7f4c309" git-tree-sha1 = "621850838b3e74dd6dd047b5432d2e976877104e"
repo-rev = "master"
repo-url = "https://github.com/JuliaDocs/Documenter.jl.git"
uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4" uuid = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
version = "0.26.1" version = "0.27.2"
[[Downloads]]
deps = ["ArgTools", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
[[EarCut_jll]] [[EarCut_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
@ -113,15 +113,15 @@ version = "2.1.5+1"
[[Expat_jll]] [[Expat_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "1402e52fcda25064f51c77a9655ce8680b76acf0" git-tree-sha1 = "b3bfd02e98aedfa5cf885665493c5598c350cd2f"
uuid = "2e619515-83b5-522b-bb60-26c02a35a201" uuid = "2e619515-83b5-522b-bb60-26c02a35a201"
version = "2.2.7+6" version = "2.2.10+0"
[[FFMPEG]] [[FFMPEG]]
deps = ["FFMPEG_jll", "x264_jll"] deps = ["FFMPEG_jll"]
git-tree-sha1 = "9a73ffdc375be61b0e4516d83d880b265366fe1f" git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8"
uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a"
version = "0.4.0" version = "0.4.1"
[[FFMPEG_jll]] [[FFMPEG_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "LibVPX_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "Pkg", "Zlib_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "LibVPX_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "Pkg", "Zlib_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"]
@ -155,62 +155,62 @@ version = "2.10.1+5"
[[FriBidi_jll]] [[FriBidi_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "0d20aed5b14dd4c9a2453c1b601d08e1149679cc" git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91"
uuid = "559328eb-81f9-559d-9380-de523a88c83c" uuid = "559328eb-81f9-559d-9380-de523a88c83c"
version = "1.0.5+6" version = "1.0.10+0"
[[GLFW_jll]] [[GLFW_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"]
git-tree-sha1 = "a1bbf700b5388bffc3d882f4f4d625cf1c714fd7" git-tree-sha1 = "dba1e8614e98949abfa60480b13653813d8f0157"
uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89"
version = "3.3.2+1" version = "3.3.5+0"
[[GR]] [[GR]]
deps = ["Base64", "DelimitedFiles", "GR_jll", "HTTP", "JSON", "LinearAlgebra", "Pkg", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"] deps = ["Base64", "DelimitedFiles", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Printf", "Random", "Serialization", "Sockets", "Test", "UUIDs"]
git-tree-sha1 = "12d971c928b7ecf19b748a2c7df6a365690dbf2c" git-tree-sha1 = "b83e3125048a9c3158cbb7ca423790c7b1b57bea"
uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71"
version = "0.55.0" version = "0.57.5"
[[GR_jll]] [[GR_jll]]
deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt_jll", "Zlib_jll", "libpng_jll"] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"]
git-tree-sha1 = "8aee6fa096b0cbdb05e71750c978b96a08c78951" git-tree-sha1 = "e14907859a1d3aee73a019e7b3c98e9e7b8b5b3e"
uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9"
version = "0.53.0+0" version = "0.57.3+0"
[[GeometryBasics]] [[GeometryBasics]]
deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] deps = ["EarCut_jll", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"]
git-tree-sha1 = "c7f81b22b6c255861be4007a16bfdeb60e1c7f9b" git-tree-sha1 = "4136b8a5668341e58398bb472754bff4ba0456ff"
uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326"
version = "0.3.11" version = "0.3.12"
[[Gettext_jll]] [[Gettext_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"]
git-tree-sha1 = "8c14294a079216000a0bdca5ec5a447f073ddc9d" git-tree-sha1 = "9b02998aba7bf074d14de89f9d37ca24a1a0b046"
uuid = "78b55507-aeef-58d4-861c-77aaff3498b1" uuid = "78b55507-aeef-58d4-861c-77aaff3498b1"
version = "0.20.1+7" version = "0.21.0+0"
[[Glib_jll]] [[Glib_jll]]
deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE_jll", "Pkg", "Zlib_jll"] deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE_jll", "Pkg", "Zlib_jll"]
git-tree-sha1 = "04690cc5008b38ecbdfede949220bc7d9ba26397" git-tree-sha1 = "47ce50b742921377301e15005c96e979574e130b"
uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d"
version = "2.59.0+4" version = "2.68.1+0"
[[Grisu]] [[Grisu]]
git-tree-sha1 = "03d381f65183cb2d0af8b3425fde97263ce9a995" git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2"
uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe"
version = "1.0.0" version = "1.0.2"
[[HTTP]] [[HTTP]]
deps = ["Base64", "Dates", "IniFile", "MbedTLS", "NetworkOptions", "Sockets", "URIs"] deps = ["Base64", "Dates", "IniFile", "MbedTLS", "NetworkOptions", "Sockets", "URIs"]
git-tree-sha1 = "c9f380c76d8aaa1fa7ea9cf97bddbc0d5b15adc2" git-tree-sha1 = "86ed84701fbfd1142c9786f8e53c595ff5a4def9"
uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3"
version = "0.9.5" version = "0.9.10"
[[IOCapture]] [[IOCapture]]
deps = ["Logging"] deps = ["Logging", "Random"]
git-tree-sha1 = "1868e4e7ad2f93d8de0904d89368c527b46aa6a1" git-tree-sha1 = "f7be53659ab06ddc986428d3a9dcc95f6fa6705a"
uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89" uuid = "b5f81e59-6552-4d32-b1f0-c071b021bf89"
version = "0.2.1" version = "0.2.2"
[[IniFile]] [[IniFile]]
deps = ["Test"] deps = ["Test"]
@ -233,9 +233,10 @@ uuid = "82899510-4779-5014-852e-03e436cf321d"
version = "1.0.0" version = "1.0.0"
[[JLLWrappers]] [[JLLWrappers]]
git-tree-sha1 = "a431f5f2ca3f4feef3bd7a5e94b8b8d4f2f647a0" deps = ["Preferences"]
git-tree-sha1 = "642a199af8b68253517b80bd3bfd17eb4e84df6e"
uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210"
version = "1.2.0" version = "1.3.0"
[[JSON]] [[JSON]]
deps = ["Dates", "Mmap", "Parsers", "Unicode"] deps = ["Dates", "Mmap", "Parsers", "Unicode"]
@ -245,21 +246,21 @@ version = "0.21.1"
[[JpegTurbo_jll]] [[JpegTurbo_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "9aff0587d9603ea0de2c6f6300d9f9492bbefbd3" git-tree-sha1 = "d735490ac75c5cb9f1b00d8b5509c11984dc6943"
uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8"
version = "2.0.1+3" version = "2.1.0+0"
[[LAME_jll]] [[LAME_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "df381151e871f41ee86cee4f5f6fd598b8a68826" git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c"
uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d"
version = "3.100.0+3" version = "3.100.1+0"
[[LZO_jll]] [[LZO_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "f128cd6cd05ffd6d3df0523ed99b90ff6f9b349a" git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6"
uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac"
version = "2.10.0+3" version = "2.10.1+0"
[[LaTeXStrings]] [[LaTeXStrings]]
git-tree-sha1 = "c7f1c695e06c01b95a67f0cd1d34994f3e7db104" git-tree-sha1 = "c7f1c695e06c01b95a67f0cd1d34994f3e7db104"
@ -268,34 +269,46 @@ version = "1.2.1"
[[Latexify]] [[Latexify]]
deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "Printf", "Requires"] deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "Printf", "Requires"]
git-tree-sha1 = "fbc08b5a78e264ba3d19da90b36ce1789ca67a40" git-tree-sha1 = "a4b12a1bd2ebade87891ab7e36fdbce582301a92"
uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316"
version = "0.14.11" version = "0.15.6"
[[LibCURL]]
deps = ["LibCURL_jll", "MozillaCACerts_jll"]
uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21"
[[LibCURL_jll]]
deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"]
uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0"
[[LibGit2]] [[LibGit2]]
deps = ["Printf"] deps = ["Base64", "NetworkOptions", "Printf", "SHA"]
uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" uuid = "76f85450-5226-5b5a-8eaa-529ad045b433"
[[LibSSH2_jll]]
deps = ["Artifacts", "Libdl", "MbedTLS_jll"]
uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8"
[[LibVPX_jll]] [[LibVPX_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "85fcc80c3052be96619affa2fe2e6d2da3908e11" git-tree-sha1 = "12ee7e23fa4d18361e7c2cde8f8337d4c3101bc7"
uuid = "dd192d2f-8180-539f-9fb4-cc70b1dcf69a" uuid = "dd192d2f-8180-539f-9fb4-cc70b1dcf69a"
version = "1.9.0+1" version = "1.10.0+0"
[[Libdl]] [[Libdl]]
uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb"
[[Libffi_jll]] [[Libffi_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "a2cd088a88c0d37eef7d209fd3d8712febce0d90" git-tree-sha1 = "761a393aeccd6aa92ec3515e428c26bf99575b3b"
uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490"
version = "3.2.1+4" version = "3.2.2+0"
[[Libgcrypt_jll]] [[Libgcrypt_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"]
git-tree-sha1 = "b391a18ab1170a2e568f9fb8d83bc7c780cb9999" git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae"
uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4"
version = "1.8.5+4" version = "1.8.7+0"
[[Libglvnd_jll]] [[Libglvnd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"]
@ -305,33 +318,33 @@ version = "1.3.0+3"
[[Libgpg_error_jll]] [[Libgpg_error_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "ec7f2e8ad5c9fa99fc773376cdbc86d9a5a23cb7" git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9"
uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8"
version = "1.36.0+3" version = "1.42.0+0"
[[Libiconv_jll]] [[Libiconv_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "8e924324b2e9275a51407a4e06deb3455b1e359f" git-tree-sha1 = "42b62845d70a619f063a7da093d995ec8e15e778"
uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531"
version = "1.16.0+7" version = "1.16.1+1"
[[Libmount_jll]] [[Libmount_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "51ad0c01c94c1ce48d5cad629425035ad030bfd5" git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73"
uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9"
version = "2.34.0+3" version = "2.35.0+0"
[[Libtiff_jll]] [[Libtiff_jll]]
deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"] deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"]
git-tree-sha1 = "291dd857901f94d683973cdf679984cdf73b56d0" git-tree-sha1 = "340e257aada13f95f98ee352d316c3bed37c8ab9"
uuid = "89763e89-9b03-5906-acba-b20f662cd828" uuid = "89763e89-9b03-5906-acba-b20f662cd828"
version = "4.1.0+2" version = "4.3.0+0"
[[Libuuid_jll]] [[Libuuid_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "f879ae9edbaa2c74c922e8b85bb83cc84ea1450b" git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066"
uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700"
version = "2.34.0+7" version = "2.36.0+0"
[[LinearAlgebra]] [[LinearAlgebra]]
deps = ["Libdl"] deps = ["Libdl"]
@ -341,7 +354,7 @@ uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
deps = ["Base64", "IOCapture", "JSON", "REPL"] deps = ["Base64", "IOCapture", "JSON", "REPL"]
path = ".." path = ".."
uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306" uuid = "98b081ad-f1c9-55d3-8b20-4c87d4299306"
version = "2.8.0" version = "2.8.1"
[[Logging]] [[Logging]]
uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" uuid = "56ddb016-857b-54e1-b83d-db4d58db5568"
@ -363,10 +376,8 @@ uuid = "739be429-bea8-5141-9913-cc70e7f3736d"
version = "1.0.3" version = "1.0.3"
[[MbedTLS_jll]] [[MbedTLS_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "Libdl"]
git-tree-sha1 = "0eef589dd1c26a3ac9d753fe1a8bcad63f956fa6"
uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1"
version = "2.16.8+1"
[[Measures]] [[Measures]]
git-tree-sha1 = "e498ddeee6f9fdb4551ce855a46f54dbd900245f" git-tree-sha1 = "e498ddeee6f9fdb4551ce855a46f54dbd900245f"
@ -375,66 +386,67 @@ version = "0.3.1"
[[Missings]] [[Missings]]
deps = ["DataAPI"] deps = ["DataAPI"]
git-tree-sha1 = "f8c673ccc215eb50fcadb285f522420e29e69e1c" git-tree-sha1 = "4ea90bd5d3985ae1f9a908bd4500ae88921c5ce7"
uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28"
version = "0.4.5" version = "1.0.0"
[[Mmap]] [[Mmap]]
uuid = "a63ad114-7e13-5084-954f-fe012c677804" uuid = "a63ad114-7e13-5084-954f-fe012c677804"
[[MozillaCACerts_jll]]
uuid = "14a3606d-f60d-562e-9121-12d972cd8159"
[[NaNMath]] [[NaNMath]]
git-tree-sha1 = "bfe47e760d60b82b66b61d2d44128b62e3a369fb" git-tree-sha1 = "bfe47e760d60b82b66b61d2d44128b62e3a369fb"
uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3"
version = "0.3.5" version = "0.3.5"
[[NetworkOptions]] [[NetworkOptions]]
git-tree-sha1 = "ed3157f48a05543cce9b241e1f2815f7e843d96e"
uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908"
version = "1.2.0"
[[Ogg_jll]] [[Ogg_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "a42c0f138b9ebe8b58eba2271c5053773bde52d0" git-tree-sha1 = "7937eda4681660b4d6aeeecc2f7e1c81c8ee4e2f"
uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051"
version = "1.3.4+2" version = "1.3.5+0"
[[OpenSSL_jll]] [[OpenSSL_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "71bbbc616a1d710879f5a1021bcba65ffba6ce58" git-tree-sha1 = "15003dcb7d8db3c6c857fda14891a539a8f2705a"
uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95"
version = "1.1.1+6" version = "1.1.10+0"
[[Opus_jll]] [[Opus_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "f9d57f4126c39565e05a2b0264df99f497fc6f37" git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720"
uuid = "91d4177d-7536-5919-b921-800302f37372" uuid = "91d4177d-7536-5919-b921-800302f37372"
version = "1.3.1+3" version = "1.3.2+0"
[[OrderedCollections]] [[OrderedCollections]]
git-tree-sha1 = "4fa2ba51070ec13fcc7517db714445b4ab986bdf" git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c"
uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d"
version = "1.4.0" version = "1.4.1"
[[PCRE_jll]] [[PCRE_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "1b556ad51dceefdbf30e86ffa8f528b73c7df2bb" git-tree-sha1 = "b2a7af664e098055a7529ad1a900ded962bca488"
uuid = "2f80f16e-611a-54ab-bc61-aa92de5b98fc" uuid = "2f80f16e-611a-54ab-bc61-aa92de5b98fc"
version = "8.42.0+4" version = "8.44.0+0"
[[Parsers]] [[Parsers]]
deps = ["Dates"] deps = ["Dates"]
git-tree-sha1 = "223a825cccef2228f3fdbf2ecc7ca93363059073" git-tree-sha1 = "c8abc88faa3f7a3950832ac5d6e690881590d6dc"
uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0"
version = "1.0.16" version = "1.1.0"
[[Pixman_jll]] [[Pixman_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "6a20a83c1ae86416f0a5de605eaea08a552844a3" git-tree-sha1 = "b4f5d02549a10e20780a24fce72bea96b6329e29"
uuid = "30392449-352a-5448-841d-b1acce4e97dc" uuid = "30392449-352a-5448-841d-b1acce4e97dc"
version = "0.40.0+0" version = "0.40.1+0"
[[Pkg]] [[Pkg]]
deps = ["Dates", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "UUIDs"] deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"]
uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
[[PlotThemes]] [[PlotThemes]]
@ -451,22 +463,28 @@ version = "1.0.10"
[[Plots]] [[Plots]]
deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"] deps = ["Base64", "Contour", "Dates", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs"]
git-tree-sha1 = "142dd04f5060c04de91cc10ca76dffb291a02426" git-tree-sha1 = "e995fa1821b6daff8b107a8eafbec234ae2263d0"
uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
version = "1.10.6" version = "1.16.5"
[[Preferences]]
deps = ["TOML"]
git-tree-sha1 = "00cfd92944ca9c760982747e9a1d0d5d86ab1e5a"
uuid = "21216c6a-2e73-6563-6e65-726566657250"
version = "1.2.2"
[[Printf]] [[Printf]]
deps = ["Unicode"] deps = ["Unicode"]
uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7" uuid = "de0858da-6303-5e67-8744-51eddeeeb8d7"
[[Qt_jll]] [[Qt5Base_jll]]
deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"]
git-tree-sha1 = "7760cfea90bec61814e31dfb204fa4b81bba7b57" git-tree-sha1 = "ad368663a5e20dbb8d6dc2fddeefe4dae0781ae8"
uuid = "ede63266-ebff-546c-83e0-1c6fb6d0efc8" uuid = "ea2cea3b-5b76-57ae-a6ef-0a8af62496e1"
version = "5.15.2+1" version = "5.15.3+0"
[[REPL]] [[REPL]]
deps = ["InteractiveUtils", "Markdown", "Sockets"] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"]
uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb"
[[Random]] [[Random]]
@ -480,14 +498,14 @@ version = "1.1.1"
[[RecipesPipeline]] [[RecipesPipeline]]
deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase"] deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase"]
git-tree-sha1 = "c4d54a78e287de7ec73bbc928ce5eb3c60f80b24" git-tree-sha1 = "7a5026a6741c14147d1cb6daf2528a77ca28eb51"
uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c"
version = "0.3.1" version = "0.3.2"
[[Reexport]] [[Reexport]]
git-tree-sha1 = "57d8440b0c7d98fc4f889e478e80f268d534c9d5" git-tree-sha1 = "5f6c21241f0f655da3952fd60aa18477cf96c220"
uuid = "189a3867-3050-52da-a836-e630ba90ab69" uuid = "189a3867-3050-52da-a836-e630ba90ab69"
version = "1.0.0" version = "1.1.0"
[[Requires]] [[Requires]]
deps = ["UUIDs"] deps = ["UUIDs"]
@ -500,9 +518,9 @@ uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
[[Scratch]] [[Scratch]]
deps = ["Dates"] deps = ["Dates"]
git-tree-sha1 = "ad4b278adb62d185bbcb6864dc24959ab0627bf6" git-tree-sha1 = "0b4b7f1393cff97c33891da2a0bf69c6ed241fda"
uuid = "6c6a2e73-6563-6170-7368-637461726353" uuid = "6c6a2e73-6563-6170-7368-637461726353"
version = "1.0.3" version = "1.1.0"
[[Serialization]] [[Serialization]]
uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b"
@ -513,18 +531,18 @@ uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383"
[[Showoff]] [[Showoff]]
deps = ["Dates", "Grisu"] deps = ["Dates", "Grisu"]
git-tree-sha1 = "ee010d8f103468309b8afac4abb9be2e18ff1182" git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de"
uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f"
version = "0.3.2" version = "1.0.3"
[[Sockets]] [[Sockets]]
uuid = "6462fe0b-24de-5631-8697-dd941f90decc" uuid = "6462fe0b-24de-5631-8697-dd941f90decc"
[[SortingAlgorithms]] [[SortingAlgorithms]]
deps = ["DataStructures", "Random", "Test"] deps = ["DataStructures"]
git-tree-sha1 = "03f5898c9959f8115e30bc7226ada7d0df554ddd" git-tree-sha1 = "2ec1962eba973f383239da22e75218565c390a96"
uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c"
version = "0.3.1" version = "1.0.0"
[[SparseArrays]] [[SparseArrays]]
deps = ["LinearAlgebra", "Random"] deps = ["LinearAlgebra", "Random"]
@ -532,46 +550,59 @@ uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf"
[[StaticArrays]] [[StaticArrays]]
deps = ["LinearAlgebra", "Random", "Statistics"] deps = ["LinearAlgebra", "Random", "Statistics"]
git-tree-sha1 = "9da72ed50e94dbff92036da395275ed114e04d49" git-tree-sha1 = "42378d3bab8b4f57aa1ca443821b752850592668"
uuid = "90137ffa-7385-5640-81b9-e52037218182" uuid = "90137ffa-7385-5640-81b9-e52037218182"
version = "1.0.1" version = "1.2.2"
[[Statistics]] [[Statistics]]
deps = ["LinearAlgebra", "SparseArrays"] deps = ["LinearAlgebra", "SparseArrays"]
uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
[[StatsAPI]]
git-tree-sha1 = "1958272568dc176a1d881acb797beb909c785510"
uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0"
version = "1.0.0"
[[StatsBase]] [[StatsBase]]
deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics"] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"]
git-tree-sha1 = "a83fa3021ac4c5a918582ec4721bc0cf70b495a9" git-tree-sha1 = "2f6792d523d7448bbe2fec99eca9218f06cc746d"
uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
version = "0.33.4" version = "0.33.8"
[[StructArrays]] [[StructArrays]]
deps = ["Adapt", "DataAPI", "Tables"] deps = ["Adapt", "DataAPI", "Tables"]
git-tree-sha1 = "26ea43b4be7e919a2390c3c0f824e7eb4fc19a0a" git-tree-sha1 = "44b3afd37b17422a62aea25f04c1f7e09ce6b07f"
uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a"
version = "0.5.0" version = "0.5.1"
[[TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
[[TableTraits]] [[TableTraits]]
deps = ["IteratorInterfaceExtensions"] deps = ["IteratorInterfaceExtensions"]
git-tree-sha1 = "b1ad568ba658d8cbb3b892ed5380a6f3e781a81e" git-tree-sha1 = "c06b2f539df1c6efa794486abfb6ed2022561a39"
uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c"
version = "1.0.0" version = "1.0.1"
[[Tables]] [[Tables]]
deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"] deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "TableTraits", "Test"]
git-tree-sha1 = "f03fc113290ee7726b173fc7ea661260d204b3f2" git-tree-sha1 = "aa30f8bb63f9ff3f8303a06c604c8500a69aa791"
uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c"
version = "1.4.0" version = "1.4.3"
[[Tar]]
deps = ["ArgTools", "SHA"]
uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e"
[[Test]] [[Test]]
deps = ["Distributed", "InteractiveUtils", "Logging", "Random"] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"]
uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
[[URIs]] [[URIs]]
git-tree-sha1 = "7855809b88d7b16e9b029afd17880930626f54a2" git-tree-sha1 = "97bbe755a53fe859669cd907f2d96aee8d2c1355"
uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4"
version = "1.2.0" version = "1.3.0"
[[UUIDs]] [[UUIDs]]
deps = ["Random", "SHA"] deps = ["Random", "SHA"]
@ -594,15 +625,15 @@ version = "1.18.0+4"
[[XML2_jll]] [[XML2_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"]
git-tree-sha1 = "be0db24f70aae7e2b89f2f3092e93b8606d659a6" git-tree-sha1 = "1acf5bdf07aa0907e0a37d3718bb88d4b687b74a"
uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a"
version = "2.9.10+3" version = "2.9.12+0"
[[XSLT_jll]] [[XSLT_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Pkg", "XML2_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"]
git-tree-sha1 = "2b3eac39df218762d2d005702d601cd44c997497" git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a"
uuid = "aed1982a-8fda-507f-9586-7b0439959a61" uuid = "aed1982a-8fda-507f-9586-7b0439959a61"
version = "1.1.33+4" version = "1.1.34+0"
[[Xorg_libX11_jll]] [[Xorg_libX11_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"]
@ -731,16 +762,14 @@ uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10"
version = "1.4.0+3" version = "1.4.0+3"
[[Zlib_jll]] [[Zlib_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Libdl"]
git-tree-sha1 = "320228915c8debb12cb434c59057290f0834dbf6"
uuid = "83775a58-1f1d-513f-b197-d71354ab007a" uuid = "83775a58-1f1d-513f-b197-d71354ab007a"
version = "1.2.11+18"
[[Zstd_jll]] [[Zstd_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "2c1332c54931e83f8f94d310fa447fd743e8d600" git-tree-sha1 = "cc4bf3fdde8b7e3e9fa0351bdeedba1cf3b7f6e6"
uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4"
version = "1.4.8+0" version = "1.5.0+0"
[[libass_jll]] [[libass_jll]]
deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
@ -756,15 +785,23 @@ version = "0.1.6+4"
[[libpng_jll]] [[libpng_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"]
git-tree-sha1 = "6abbc424248097d69c0c87ba50fcb0753f93e0ee" git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c"
uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f"
version = "1.6.37+6" version = "1.6.38+0"
[[libvorbis_jll]] [[libvorbis_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"]
git-tree-sha1 = "fa14ac25af7a4b8a7f61b287a124df7aab601bcd" git-tree-sha1 = "c45f4e40e7aafe9d086379e5578947ec8b95a8fb"
uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a"
version = "1.3.6+6" version = "1.3.7+0"
[[nghttp2_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d"
[[p7zip_jll]]
deps = ["Artifacts", "Libdl"]
uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0"
[[x264_jll]] [[x264_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]

3
docs/make.jl
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@ -66,6 +66,7 @@ makedocs(
deploydocs( deploydocs(
repo = "github.com/fredrikekre/Literate.jl.git", repo = "github.com/fredrikekre/Literate.jl.git",
push_preview=true, push_preview = true,
versions = ["v2" => "v^", "v#.#", "dev" => "dev"],
deploy_config = deployconfig, deploy_config = deployconfig,
) )

2
docs/src/customprocessing.md
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@ -10,7 +10,7 @@ is done by letting the user supply custom pre- and post-processing functions
that may do transformation of the content. that may do transformation of the content.
All of the generators ([`Literate.markdown`](@ref), [`Literate.notebook`](@ref) All of the generators ([`Literate.markdown`](@ref), [`Literate.notebook`](@ref)
and [`Literate.script`](@ref)) accepts `preprocess` and `postprocess` keyword and [`Literate.script`](@ref)) accept `preprocess` and `postprocess` keyword
arguments. The default "transformation" is the `identity` function. The input arguments. The default "transformation" is the `identity` function. The input
to the transformation functions is a `String`, and the output should be the to the transformation functions is a `String`, and the output should be the
transformed `String`. transformed `String`.

4
docs/src/fileformat.md
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@ -12,7 +12,7 @@ The basic syntax is simple:
- all other lines are treated as julia code. - all other lines are treated as julia code.
Leading whitespace is allowed before `#`, but it will be removed when generating the Leading whitespace is allowed before `#`, but it will be removed when generating the
output. Since `#`-lines is treated as markdown we can not use that for regular julia output. Since `#`-lines are treated as markdown we can not use that for regular julia
comments, for this you can instead use `## `, which will render as `# ` in the output. comments, for this you can instead use `## `, which will render as `# ` in the output.
Lets look at a simple example: Lets look at a simple example:
@ -113,7 +113,7 @@ is a case where we can prepend `#md` to those lines:
#md # ``` #md # ```
```` ````
The lines in the example above would be filtered out in the preprocessing step, unless we are The lines in the example above would be filtered out in the preprocessing step, unless we are
generating a markdown file. When generating a markdown file we would simple remove generating a markdown file. When generating a markdown file we would simply remove
the leading `#md ` from the lines. Beware that the space after the tag is also removed. the leading `#md ` from the lines. Beware that the space after the tag is also removed.
The `#src` token can also be placed at the *end* of a line. This is to make it possible The `#src` token can also be placed at the *end* of a line. This is to make it possible

4
docs/src/index.md
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@ -29,8 +29,8 @@ Examples are (probably) the best way to showcase your awesome package, and examp
are often the best way for a new user to learn how to use it. It is therefore important are often the best way for a new user to learn how to use it. It is therefore important
that the documentation of your package contains examples for users to read and study. that the documentation of your package contains examples for users to read and study.
However, people are different, and we all prefer different ways of trying out a new However, people are different, and we all prefer different ways of trying out a new
package. Some people wants to RTFM, others want to explore the package interactively in, package. Some people want to RTFM, others want to explore the package interactively in,
for example, a notebook, and some people wants to study the source code. The aim of for example, a notebook, and some people want to study the source code. The aim of
Literate is to make it easy to give the user all of these options, while still Literate is to make it easy to give the user all of these options, while still
keeping maintenance to a minimum. keeping maintenance to a minimum.

6
docs/src/outputformats.md
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@ -1,6 +1,6 @@
# [**4.** Output Formats](@id Output-Formats) # [**4.** Output Formats](@id Output-Formats)
When the source is parsed, and have been processed it is time to render the output. When the source is parsed, and has been processed it is time to render the output.
We will consider the following source snippet: We will consider the following source snippet:
```@eval ```@eval
@ -155,10 +155,10 @@ keyword arguments.
Passing configuration as a dictionary requires at least Literate version 2.2. Passing configuration as a dictionary requires at least Literate version 2.2.
!!! note "Configuration precedence" !!! note "Configuration precedence"
Individual keyword arguments takes precedence over the `config` dictionary, so for e.g. Individual keyword arguments take precedence over the `config` dictionary, so for e.g.
`Literate.markdown(...; config = Dict("name" => "hello"), name = "world")` the `Literate.markdown(...; config = Dict("name" => "hello"), name = "world")` the
resulting configuration for `name` will be `"world"`. Both individual keyword arguments resulting configuration for `name` will be `"world"`. Both individual keyword arguments
and the `config` dictionary takes precedence over the default. and the `config` dictionary take precedence over the default.
Available configurations with description and default values are given in the reference for Available configurations with description and default values are given in the reference for
[`Literate.DEFAULT_CONFIGURATION`](@ref) just below. [`Literate.DEFAULT_CONFIGURATION`](@ref) just below.

2
docs/src/tips.md
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@ -19,7 +19,7 @@ the generated notebook can become large.
In order to remedy this you can use the clever Julia package In order to remedy this you can use the clever Julia package
[`DisplayAs`](https://github.com/tkf/DisplayAs.jl) to limit the output capabilities of [`DisplayAs`](https://github.com/tkf/DisplayAs.jl) to limit the output capabilities of
and object. For example, to "force" an image to be captures as `image/png` only, an object. For example, to "force" an image to be captures as `image/png` only,
you can use you can use
```julia ```julia

2
examples/example.jl
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@ -8,7 +8,7 @@
# This is an example generated with Literate based on this # This is an example generated with Literate based on this
# source file: [`example.jl`](@__REPO_ROOT_URL__/examples/example.jl). # source file: [`example.jl`](@__REPO_ROOT_URL__/examples/example.jl).
# You are seeing the # You are seeing the
#md # HTML-output which Documenter have generated based on a markdown #md # HTML-output which Documenter has generated based on a markdown
#md # file generated with Literate. The corresponding notebook #md # file generated with Literate. The corresponding notebook
#md # can be viewed in [nbviewer](http://nbviewer.jupyter.org/) here: #md # can be viewed in [nbviewer](http://nbviewer.jupyter.org/) here:
#md # [`example.ipynb`](@__NBVIEWER_ROOT_URL__/generated/example.ipynb), #md # [`example.ipynb`](@__NBVIEWER_ROOT_URL__/generated/example.ipynb),

20
src/Literate.jl
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@ -459,7 +459,7 @@ function markdown(inputfile, outputdir=pwd(); config::Dict=Dict(), kwargs...)
write_code = !(all(l -> endswith(l, "#hide"), chunk.lines) && !(config["documenter"]::Bool)) write_code = !(all(l -> endswith(l, "#hide"), chunk.lines) && !(config["documenter"]::Bool))
write_code && write(iomd, seekstart(iocode)) write_code && write(iomd, seekstart(iocode))
if config["execute"]::Bool if config["execute"]::Bool
execute_markdown!(iomd, sb, join(chunk.lines, '\n'), outputdir) execute_markdown!(iomd, sb, join(chunk.lines, '\n'), outputdir; inputfile=config["literate_inputfile"])
end end
end end
write(iomd, '\n') # add a newline between each chunk write(iomd, '\n') # add a newline between each chunk
@ -473,10 +473,12 @@ function markdown(inputfile, outputdir=pwd(); config::Dict=Dict(), kwargs...)
return outputfile return outputfile
end end
function execute_markdown!(io::IO, sb::Module, block::String, outputdir) function execute_markdown!(io::IO, sb::Module, block::String, outputdir; inputfile::String="<unknown>")
# TODO: Deal with explicit display(...) calls # TODO: Deal with explicit display(...) calls
r, str, _ = execute_block(sb, block) r, str, _ = execute_block(sb, block; inputfile=inputfile)
plain_fence = "\n````\n" => "\n````" # issue #101: consecutive codefenced blocks need newline; issue #144: quadruple backticks allow for tripple backticks in the output - won't probably ever occur, but better safe than sorry # issue #101: consecutive codefenced blocks need newline
# issue #144: quadruple backticks allow for triple backticks in the output
plain_fence = "\n````\n" => "\n````"
if r !== nothing && !REPL.ends_with_semicolon(block) if r !== nothing && !REPL.ends_with_semicolon(block)
for (mime, ext) in [(MIME("image/png"), ".png"), (MIME("image/jpeg"), ".jpeg")] for (mime, ext) in [(MIME("image/png"), ".png"), (MIME("image/jpeg"), ".jpeg")]
if showable(mime, r) if showable(mime, r)
@ -602,7 +604,7 @@ function jupyter_notebook(chunks, config)
@info "executing notebook `$(config["name"] * ".ipynb")`" @info "executing notebook `$(config["name"] * ".ipynb")`"
try try
cd(config["literate_outputdir"]) do cd(config["literate_outputdir"]) do
nb = execute_notebook(nb) nb = execute_notebook(nb; inputfile=config["literate_inputfile"])
end end
catch err catch err
@error "error when executing notebook based on input file: " * @error "error when executing notebook based on input file: " *
@ -613,7 +615,7 @@ function jupyter_notebook(chunks, config)
return nb return nb
end end
function execute_notebook(nb) function execute_notebook(nb; inputfile::String="<unknown>")
sb = sandbox() sb = sandbox()
execution_count = 0 execution_count = 0
for cell in nb["cells"] for cell in nb["cells"]
@ -621,7 +623,7 @@ function execute_notebook(nb)
execution_count += 1 execution_count += 1
cell["execution_count"] = execution_count cell["execution_count"] = execution_count
block = join(cell["source"]) block = join(cell["source"])
r, str, display_dicts = execute_block(sb, block) r, str, display_dicts = execute_block(sb, block; inputfile=inputfile)
# str should go into stream # str should go into stream
if !isempty(str) if !isempty(str)
@ -703,7 +705,7 @@ function Base.display(ld::LiterateDisplay, mime::MIME, x)
end end
# Execute a code-block in a module and capture stdout/stderr and the result # Execute a code-block in a module and capture stdout/stderr and the result
function execute_block(sb::Module, block::String) function execute_block(sb::Module, block::String; inputfile::String="<unknown>")
@debug """execute_block($sb, block) @debug """execute_block($sb, block)
``` ```
$(block) $(block)
@ -725,7 +727,7 @@ function execute_block(sb::Module, block::String)
if c.error if c.error
error(""" error("""
$(sprint(showerror, c.value)) $(sprint(showerror, c.value))
when executing the following code block when executing the following code block in file `$(Base.contractuser(inputfile))`
```julia ```julia
$block $block

5
test/runtests.jl
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@ -1038,14 +1038,15 @@ end end
# test error when executing notebook # test error when executing notebook
write(inputfile, "for i in 1:10\n println(i)") write(inputfile, "for i in 1:10\n println(i)")
r = @test_logs((:error, r"error when executing"), match_mode=:any, r = @test_logs((:error, r"error when executing notebook based on input file: "), match_mode=:any,
try try
Literate.notebook(inputfile, outdir) Literate.notebook(inputfile, outdir)
catch err catch err
err err
end) end)
@test isa(r, ErrorException) @test isa(r, ErrorException)
@test occursin("when executing the following code block", r.msg) @test occursin("when executing the following code block in file ", r.msg)
@test occursin(inputfile, r.msg)
# verify that inputfile exists # verify that inputfile exists
@test_throws ArgumentError Literate.notebook("nonexistent.jl", outdir) @test_throws ArgumentError Literate.notebook("nonexistent.jl", outdir)

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