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Literate.jl
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  1. 34
      dev/assets/documenter.css
  2. 3
      dev/assets/documenter.js
  3. 29
      dev/customprocessing.html
  4. 29
      dev/customprocessing/index.html
  5. 12
      dev/documenter.html
  6. 12
      dev/documenter/index.html
  7. 17
      dev/fileformat.html
  8. 17
      dev/fileformat/index.html
  9. 352
      dev/generated/example.html
  10. 1144
      dev/generated/example.ipynb
  11. 357
      dev/generated/example/index.html
  12. 2
      dev/index.html
  13. 38
      dev/outputformats.html
  14. 38
      dev/outputformats/index.html
  15. 29
      dev/pipeline.html
  16. 29
      dev/pipeline/index.html
  17. 2
      dev/search.html
  18. 2
      dev/search/index.html
  19. 80
      dev/search_index.js

34
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@ -170,8 +170,10 @@ nav.toc { @@ -170,8 +170,10 @@ nav.toc {
left: 0;
bottom: 0;
width: 20em;
display: flex;
flex-flow: column nowrap;
overflow-y: auto;
padding: 1em 0;
padding: 1em 0 0 0;
background-color: #fcfcfc;
box-shadow: inset -14px 0px 5px -12px rgb(210,210,210);
}
@ -192,6 +194,7 @@ nav.toc h1 { @@ -192,6 +194,7 @@ nav.toc h1 {
nav.toc select {
display: block;
height: 2em;
flex-shrink: 0;
padding: 0 1.6em 0 1em;
min-width: 7em;
max-width: 90%;
@ -239,6 +242,16 @@ nav.toc > ul * { @@ -239,6 +242,16 @@ nav.toc > ul * {
margin: 0;
}
nav.toc > ul {
min-height: 2em;
overflow-y: auto;
margin: 0;
}
nav.toc > ul > li:last-child {
padding-bottom: 1em;
}
nav.toc ul {
color: #404040;
padding: 0;
@ -305,6 +318,21 @@ nav.toc li.current > .toctext { @@ -305,6 +318,21 @@ nav.toc li.current > .toctext {
background-color: white;
}
nav.toc ul::-webkit-scrollbar {
width: .4em;
background: none;
}
nav.toc ul::-webkit-scrollbar-thumb {
border-radius: 5px;
background: #c9c9c9;
}
nav.toc ul::-webkit-scrollbar-thumb:hover {
border-radius: 5px;
background: #aaaaaa;
}
article {
margin-left: 20em;
min-width: 20em;
@ -398,6 +426,7 @@ article section.docstring a.source-link { @@ -398,6 +426,7 @@ article section.docstring a.source-link {
.admonition {
border-radius: 3px;
background-color: #eeeeee;
margin: 1em 0;
}
.admonition-title {
@ -473,7 +502,6 @@ article section.docstring a.source-link { @@ -473,7 +502,6 @@ article section.docstring a.source-link {
@media only screen and (max-width: 768px) {
nav.toc {
position: fixed;
overflow-y: scroll;
width: 16em;
left: -16em;
-webkit-overflow-scrolling: touch;
@ -484,6 +512,7 @@ article section.docstring a.source-link { @@ -484,6 +512,7 @@ article section.docstring a.source-link {
-webkit-transition-timing-function: ease-out; /* Safari */
transition-timing-function: ease-out;
z-index: 2;
box-shadow: 5px 0px 5px 0px rgb(210,210,210);
}
nav.toc.show {
@ -531,7 +560,6 @@ article section.docstring a.source-link { @@ -531,7 +560,6 @@ article section.docstring a.source-link {
}
article > header div#topbar span {
position: fixed;
width: 80%;
height: 1.5em;
margin-top: -0.1em;

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@ -94,6 +94,9 @@ require(['jquery'], function($) { @@ -94,6 +94,9 @@ require(['jquery'], function($) {
if ($('#version-selector > option').length > 0) {
version_selector.css("visibility", "visible");
}
// Scroll the navigation bar to the currently selected menu item
$("nav.toc > ul").get(0).scrollTop = $(".current").get(0).offsetTop - $("nav.toc > ul").get(0).offsetTop;
})
})

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<!DOCTYPE html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>5. Custom pre- and post-processing · Literate.jl</title><link href="https://cdnjs.cloudflare.com/ajax/libs/normalize/4.2.0/normalize.min.css" rel="stylesheet" type="text/css"/><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.2.0/require.min.js" data-main="assets/documenter.js"></script><script src="siteinfo.js"></script><script src="../versions.js"></script><link href="assets/documenter.css" rel="stylesheet" type="text/css"/></head><body><nav class="toc"><a href="index.html"><img class="logo" src="assets/logo.png" alt="Literate.jl logo"/></a><h1>Literate.jl</h1><select id="version-selector" onChange="window.location.href=this.value" style="visibility: hidden"></select><form class="search" id="search-form" action="search.html"><input id="search-query" name="q" type="text" placeholder="Search docs"/></form><ul><li><a class="toctext" href="index.html"><strong>1.</strong> Introduction</a></li><li><a class="toctext" href="fileformat.html"><strong>2.</strong> File Format</a></li><li><a class="toctext" href="pipeline.html"><strong>3.</strong> Processing pipeline</a></li><li><a class="toctext" href="outputformats.html"><strong>4.</strong> Output Formats</a></li><li class="current"><a class="toctext" href="customprocessing.html"><strong>5.</strong> Custom pre- and post-processing</a><ul class="internal"></ul></li><li><a class="toctext" href="documenter.html"><strong>6.</strong> Interaction with Documenter.jl</a></li><li><a class="toctext" href="generated/example.html"><strong>7.</strong> Example</a></li></ul></nav><article id="docs"><header><nav><ul><li><a href="customprocessing.html"><strong>5.</strong> Custom pre- and post-processing</a></li></ul><a class="edit-page" href="https://github.com/fredrikekre/Literate.jl/blob/master/docs/src/customprocessing.md"><span class="fa"></span> Edit on GitHub</a></nav><hr/><div id="topbar"><span>5. Custom pre- and post-processing</span><a class="fa fa-bars" href="#"></a></div></header><h1><a class="nav-anchor" id="Custom-pre-and-post-processing-1" href="#Custom-pre-and-post-processing-1"><strong>5.</strong> Custom pre- and post-processing</a></h1><p>Since all packages are different, and may have different demands on how to create a nice example for the documentation it is important that the package maintainer does not feel limited by the by default provided syntax that this package offers. While you can generally come a long way by utilizing <a href="fileformat.html#Filtering-Lines-1">line filtering</a> there might be situations where you need to manually hook into the generation and change things. In Literate this is done by letting the user supply custom pre- and post-processing functions that may do transformation of the content.</p><p>All of the generators (<a href="outputformats.html#Literate.markdown"><code>Literate.markdown</code></a>, <a href="outputformats.html#Literate.notebook"><code>Literate.notebook</code></a> and <a href="outputformats.html#Literate.script"><code>Literate.script</code></a>) accepts <code>preprocess</code> and <code>postprocess</code> keyword arguments. The default &quot;transformation&quot; is the <code>identity</code> function. The input to the transformation functions is a <code>String</code>, and the output should be the transformed <code>String</code>.</p><p><code>preprocess</code> is sent the raw input that is read from the source file (<a href="pipeline.html#Pre-processing-1">modulo the default line ending transformation</a>). <code>postprocess</code> is given different things depending on the output: For markdown and script output <code>postprocess</code> is given the content <code>String</code> just before writing it to the output file, but for notebook output <code>postprocess</code> is given the dictionary representing the notebook, since, in general, this is more useful.</p><h3><a class="nav-anchor" id="Example:-Adding-current-date-1" href="#Example:-Adding-current-date-1">Example: Adding current date</a></h3><p>As an example, lets say we want to splice the date of generation into the output. We could of course update our source file before generating the docs, but we could instead use a <code>preprocess</code> function that splices the date into the source for us. Consider the following source file:</p><pre><code class="language-julia"># # Example
# This example was generated DATEOFTODAY
x = 1 // 3</code></pre><p>where <code>DATEOFTODAY</code> is a placeholder, to make it easier for our <code>preprocess</code> function to find the location. Now, lets define the <code>preprocess</code> function, for example</p><pre><code class="language-julia">function update_date(content)
content = replace(content, &quot;DATEOFTODAY&quot; =&gt; Date(now()))
return content
end</code></pre><p>which would replace every occurrence of <code>&quot;DATEOFTODAY&quot;</code> with the current date. We would now simply give this function to the generator, for example:</p><pre><code class="language-julia">Literate.markdown(&quot;input.jl&quot;, &quot;outputdir&quot;; preprocess = update_date)</code></pre><h3><a class="nav-anchor" id="Example:-Replacing-include-calls-with-included-code-1" href="#Example:-Replacing-include-calls-with-included-code-1">Example: Replacing <code>include</code> calls with included code</a></h3><p>Let&#39;s say that we have some individual example files <code>file1, file2, ...</code> etc. that are <em>runnable</em> and also following the style of Literate. These files could be for example used in the test suite of your package.</p><p>We want to group them all into a single page in our documentation, but we do not want to copy paste the content of <code>file1, ...</code> for robustness: the files are included in the test suite and some changes may occur to them. We want these changes to also be reflected in the documentation.</p><p>A very easy way to do this is using <code>preprocess</code> to interchange <code>include</code> statements with file content. First, create a runnable <code>.jl</code> following the format of Literate</p><pre><code class="language-julia"># # Replace includes
# This is an example to replace `include` calls with the actual file content.
include(&quot;file1.jl&quot;)
# Cool, we just saw the result of the above code snippet. Here is one more:
include(&quot;file2.jl&quot;)</code></pre><p>Let&#39;s say we have saved this file as <code>examples.jl</code>. Then, you want to properly define a pre-processing function:</p><pre><code class="language-julia">function replace_includes(str)
included = [&quot;file1.jl&quot;, &quot;file2.jl&quot;]
# Here the path loads the files from their proper directory,
# which may not be the directory of the `examples.jl` file!
path = &quot;directory/to/example/files/&quot;
for ex in included
content = read(path*ex, String)
str = replace(str, &quot;include(\&quot;$(ex)\&quot;)&quot; =&gt; content)
end
return str
end</code></pre><p>(of course replace <code>included</code> with your respective files)</p><p>Finally, you simply pass this function to e.g. <a href="outputformats.html#Literate.markdown"><code>Literate.markdown</code></a> as</p><pre><code class="language-julia">Literate.markdown(&quot;examples.jl&quot;, &quot;path/to/save/markdown&quot;;
name = &quot;markdown_file_name&quot;, preprocess = replace_includes)</code></pre><p>and you will see that in the final output file (here <code>markdown_file_name.md</code>) the <code>include</code> statements are replaced with the actual code to be included!</p><p>This approach is used for example in the documentation of the Julia package <a href="https://github.com/JuliaDynamics/TimeseriesPrediction.jl"><code>TimeseriesPrediction</code></a>, see <a href="https://github.com/JuliaDynamics/DynamicalSystems.jl/blob/master/docs/src/tsprediction/stexamples.jl">here</a> and <a href="https://github.com/JuliaDynamics/DynamicalSystems.jl/blob/master/docs/make.jl#L11-L29">here for the generating script</a></p><footer><hr/><a class="previous" href="outputformats.html"><span class="direction">Previous</span><span class="title"><strong>4.</strong> Output Formats</span></a><a class="next" href="documenter.html"><span class="direction">Next</span><span class="title"><strong>6.</strong> Interaction with Documenter.jl</span></a></footer></article></body></html>

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@ -0,0 +1,29 @@ @@ -0,0 +1,29 @@
<!DOCTYPE html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>5. Custom pre- and post-processing · Literate.jl</title><link href="https://cdnjs.cloudflare.com/ajax/libs/normalize/4.2.0/normalize.min.css" rel="stylesheet" type="text/css"/><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.2.0/require.min.js" data-main="../assets/documenter.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link href="../assets/documenter.css" rel="stylesheet" type="text/css"/></head><body><nav class="toc"><a href="../index.html"><img class="logo" src="../assets/logo.png" alt="Literate.jl logo"/></a><h1>Literate.jl</h1><select id="version-selector" onChange="window.location.href=this.value" style="visibility: hidden"></select><form class="search" id="search-form" action="../search/"><input id="search-query" name="q" type="text" placeholder="Search docs"/></form><ul><li><a class="toctext" href="../"><strong>1.</strong> Introduction</a></li><li><a class="toctext" href="../fileformat/"><strong>2.</strong> File Format</a></li><li><a class="toctext" href="../pipeline/"><strong>3.</strong> Processing pipeline</a></li><li><a class="toctext" href="../outputformats/"><strong>4.</strong> Output Formats</a></li><li class="current"><a class="toctext" href><strong>5.</strong> Custom pre- and post-processing</a><ul class="internal"></ul></li><li><a class="toctext" href="../documenter/"><strong>6.</strong> Interaction with Documenter.jl</a></li><li><a class="toctext" href="../generated/example/"><strong>7.</strong> Example</a></li></ul></nav><article id="docs"><header><nav><ul><li><a href><strong>5.</strong> Custom pre- and post-processing</a></li></ul><a class="edit-page" href="https://github.com/fredrikekre/Literate.jl/blob/master/docs/src/customprocessing.md"><span class="fa"></span> Edit on GitHub</a></nav><hr/><div id="topbar"><span>5. Custom pre- and post-processing</span><a class="fa fa-bars" href="#"></a></div></header><h1><a class="nav-anchor" id="Custom-pre-and-post-processing-1" href="#Custom-pre-and-post-processing-1"><strong>5.</strong> Custom pre- and post-processing</a></h1><p>Since all packages are different, and may have different demands on how to create a nice example for the documentation it is important that the package maintainer does not feel limited by the by default provided syntax that this package offers. While you can generally come a long way by utilizing <a href="../fileformat/#Filtering-Lines-1">line filtering</a> there might be situations where you need to manually hook into the generation and change things. In Literate this is done by letting the user supply custom pre- and post-processing functions that may do transformation of the content.</p><p>All of the generators (<a href="../outputformats/#Literate.markdown"><code>Literate.markdown</code></a>, <a href="../outputformats/#Literate.notebook"><code>Literate.notebook</code></a> and <a href="../outputformats/#Literate.script"><code>Literate.script</code></a>) accepts <code>preprocess</code> and <code>postprocess</code> keyword arguments. The default &quot;transformation&quot; is the <code>identity</code> function. The input to the transformation functions is a <code>String</code>, and the output should be the transformed <code>String</code>.</p><p><code>preprocess</code> is sent the raw input that is read from the source file (<a href="../pipeline/#Pre-processing-1">modulo the default line ending transformation</a>). <code>postprocess</code> is given different things depending on the output: For markdown and script output <code>postprocess</code> is given the content <code>String</code> just before writing it to the output file, but for notebook output <code>postprocess</code> is given the dictionary representing the notebook, since, in general, this is more useful.</p><h3><a class="nav-anchor" id="Example:-Adding-current-date-1" href="#Example:-Adding-current-date-1">Example: Adding current date</a></h3><p>As an example, lets say we want to splice the date of generation into the output. We could of course update our source file before generating the docs, but we could instead use a <code>preprocess</code> function that splices the date into the source for us. Consider the following source file:</p><pre><code class="language-julia"># # Example
# This example was generated DATEOFTODAY
x = 1 // 3</code></pre><p>where <code>DATEOFTODAY</code> is a placeholder, to make it easier for our <code>preprocess</code> function to find the location. Now, lets define the <code>preprocess</code> function, for example</p><pre><code class="language-julia">function update_date(content)
content = replace(content, &quot;DATEOFTODAY&quot; =&gt; Date(now()))
return content
end</code></pre><p>which would replace every occurrence of <code>&quot;DATEOFTODAY&quot;</code> with the current date. We would now simply give this function to the generator, for example:</p><pre><code class="language-julia">Literate.markdown(&quot;input.jl&quot;, &quot;outputdir&quot;; preprocess = update_date)</code></pre><h3><a class="nav-anchor" id="Example:-Replacing-include-calls-with-included-code-1" href="#Example:-Replacing-include-calls-with-included-code-1">Example: Replacing <code>include</code> calls with included code</a></h3><p>Let&#39;s say that we have some individual example files <code>file1, file2, ...</code> etc. that are <em>runnable</em> and also following the style of Literate. These files could be for example used in the test suite of your package.</p><p>We want to group them all into a single page in our documentation, but we do not want to copy paste the content of <code>file1, ...</code> for robustness: the files are included in the test suite and some changes may occur to them. We want these changes to also be reflected in the documentation.</p><p>A very easy way to do this is using <code>preprocess</code> to interchange <code>include</code> statements with file content. First, create a runnable <code>.jl</code> following the format of Literate</p><pre><code class="language-julia"># # Replace includes
# This is an example to replace `include` calls with the actual file content.
include(&quot;file1.jl&quot;)
# Cool, we just saw the result of the above code snippet. Here is one more:
include(&quot;file2.jl&quot;)</code></pre><p>Let&#39;s say we have saved this file as <code>examples.jl</code>. Then, you want to properly define a pre-processing function:</p><pre><code class="language-julia">function replace_includes(str)
included = [&quot;file1.jl&quot;, &quot;file2.jl&quot;]
# Here the path loads the files from their proper directory,
# which may not be the directory of the `examples.jl` file!
path = &quot;directory/to/example/files/&quot;
for ex in included
content = read(path*ex, String)
str = replace(str, &quot;include(\&quot;$(ex)\&quot;)&quot; =&gt; content)
end
return str
end</code></pre><p>(of course replace <code>included</code> with your respective files)</p><p>Finally, you simply pass this function to e.g. <a href="../outputformats/#Literate.markdown"><code>Literate.markdown</code></a> as</p><pre><code class="language-julia">Literate.markdown(&quot;examples.jl&quot;, &quot;path/to/save/markdown&quot;;
name = &quot;markdown_file_name&quot;, preprocess = replace_includes)</code></pre><p>and you will see that in the final output file (here <code>markdown_file_name.md</code>) the <code>include</code> statements are replaced with the actual code to be included!</p><p>This approach is used for example in the documentation of the Julia package <a href="https://github.com/JuliaDynamics/TimeseriesPrediction.jl"><code>TimeseriesPrediction</code></a>, see <a href="https://github.com/JuliaDynamics/DynamicalSystems.jl/blob/master/docs/src/tsprediction/stexamples.jl">here</a> and <a href="https://github.com/JuliaDynamics/DynamicalSystems.jl/blob/master/docs/make.jl#L11-L29">here for the generating script</a></p><footer><hr/><a class="previous" href="../outputformats/"><span class="direction">Previous</span><span class="title"><strong>4.</strong> Output Formats</span></a><a class="next" href="../documenter/"><span class="direction">Next</span><span class="title"><strong>6.</strong> Interaction with Documenter.jl</span></a></footer></article></body></html>

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@ -1,12 +0,0 @@ @@ -1,12 +0,0 @@
<!DOCTYPE html>
<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>6. Interaction with Documenter.jl · Literate.jl</title><link href="https://cdnjs.cloudflare.com/ajax/libs/normalize/4.2.0/normalize.min.css" rel="stylesheet" type="text/css"/><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.2.0/require.min.js" data-main="assets/documenter.js"></script><script src="siteinfo.js"></script><script src="../versions.js"></script><link href="assets/documenter.css" rel="stylesheet" type="text/css"/></head><body><nav class="toc"><a href="index.html"><img class="logo" src="assets/logo.png" alt="Literate.jl logo"/></a><h1>Literate.jl</h1><select id="version-selector" onChange="window.location.href=this.value" style="visibility: hidden"></select><form class="search" id="search-form" action="search.html"><input id="search-query" name="q" type="text" placeholder="Search docs"/></form><ul><li><a class="toctext" href="index.html"><strong>1.</strong> Introduction</a></li><li><a class="toctext" href="fileformat.html"><strong>2.</strong> File Format</a></li><li><a class="toctext" href="pipeline.html"><strong>3.</strong> Processing pipeline</a></li><li><a class="toctext" href="outputformats.html"><strong>4.</strong> Output Formats</a></li><li><a class="toctext" href="customprocessing.html"><strong>5.</strong> Custom pre- and post-processing</a></li><li class="current"><a class="toctext" href="documenter.html"><strong>6.</strong> Interaction with Documenter.jl</a><ul class="internal"></ul></li><li><a class="toctext" href="generated/example.html"><strong>7.</strong> Example</a></li></ul></nav><article id="docs"><header><nav><ul><li><a href="documenter.html"><strong>6.</strong> Interaction with Documenter.jl</a></li></ul><a class="edit-page" href="https://github.com/fredrikekre/Literate.jl/blob/master/docs/src/documenter.md"><span class="fa"></span> Edit on GitHub</a></nav><hr/><div id="topbar"><span>6. Interaction with Documenter.jl</span><a class="fa fa-bars" href="#"></a></div></header><h1><a class="nav-anchor" id="Interaction-with-Documenter-1" href="#Interaction-with-Documenter-1"><strong>6.</strong> Interaction with Documenter.jl</a></h1><p>Literate can be used for any purpose, it spits out regular markdown files, and notebooks. Typically, though, these files will be used to render documentation for your package. The generators (<a href="outputformats.html#Literate.markdown"><code>Literate.markdown</code></a>, <a href="outputformats.html#Literate.notebook"><code>Literate.notebook</code></a> and <a href="outputformats.html#Literate.script"><code>Literate.script</code></a>) supports a keyword argument <code>documenter</code> that lets the generator perform some extra things, keeping in mind that the source code have been written with Documenter.jl in mind. So lets take a look at what will happen if we set <code>documenter = true</code>:</p><h3><a class="nav-anchor" id="[Literate.markdown](@ref):-1" href="#[Literate.markdown](@ref):-1"><a href="outputformats.html#Literate.markdown"><code>Literate.markdown</code></a>:</a></h3><ul><li>The default code fence will change from<pre><code class="language-none">```julia
# code
```</code></pre>to Documenters <code>@example</code> blocks:<pre><code class="language-none">```@examples $(name)
# code
```</code></pre></li><li>The following <code>@meta</code> block will be added to the top of the markdown page, which redirects the &quot;Edit on GitHub&quot; link on the top of the page to the <em>source file</em> rather than the generated <code>.md</code> file:<pre><code class="language-none">```@meta
EditURL = &quot;$(relpath(inputfile, outputdir))&quot;
```</code></pre></li></ul><h3><a class="nav-anchor" id="[Literate.notebook](@ref):-1" href="#[Literate.notebook](@ref):-1"><a href="outputformats.html#Literate.notebook"><code>Literate.notebook</code></a>:</a></h3><ul><li>Documenter style <code>@ref</code>s and <code>@id</code> will be removed. This means that you can use <code>@ref</code> and <code>@id</code> in the source file without them leaking to the notebook.</li><li>Documenter style markdown math<pre><code class="language-none">```math
\int f dx
```</code></pre>is replaced with notebook compatible<pre><code class="language-none">\begin{equation}
\int f dx
\end{equation}</code></pre></li></ul><h3><a class="nav-anchor" id="[Literate.script](@ref):-1" href="#[Literate.script](@ref):-1"><a href="outputformats.html#Literate.script"><code>Literate.script</code></a>:</a></h3><ul><li>Documenter style <code>@ref</code>s and <code>@id</code> will be removed. This means that you can use <code>@ref</code> and <code>@id</code> in the source file without them leaking to the script.</li></ul><footer><hr/><a class="previous" href="customprocessing.html"><span class="direction">Previous</span><span class="title"><strong>5.</strong> Custom pre- and post-processing</span></a><a class="next" href="generated/example.html"><span class="direction">Next</span><span class="title"><strong>7.</strong> Example</span></a></footer></article></body></html>

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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>6. Interaction with Documenter.jl · Literate.jl</title><link href="https://cdnjs.cloudflare.com/ajax/libs/normalize/4.2.0/normalize.min.css" rel="stylesheet" type="text/css"/><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.2.0/require.min.js" data-main="../assets/documenter.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link href="../assets/documenter.css" rel="stylesheet" type="text/css"/></head><body><nav class="toc"><a href="../index.html"><img class="logo" src="../assets/logo.png" alt="Literate.jl logo"/></a><h1>Literate.jl</h1><select id="version-selector" onChange="window.location.href=this.value" style="visibility: hidden"></select><form class="search" id="search-form" action="../search/"><input id="search-query" name="q" type="text" placeholder="Search docs"/></form><ul><li><a class="toctext" href="../"><strong>1.</strong> Introduction</a></li><li><a class="toctext" href="../fileformat/"><strong>2.</strong> File Format</a></li><li><a class="toctext" href="../pipeline/"><strong>3.</strong> Processing pipeline</a></li><li><a class="toctext" href="../outputformats/"><strong>4.</strong> Output Formats</a></li><li><a class="toctext" href="../customprocessing/"><strong>5.</strong> Custom pre- and post-processing</a></li><li class="current"><a class="toctext" href><strong>6.</strong> Interaction with Documenter.jl</a><ul class="internal"></ul></li><li><a class="toctext" href="../generated/example/"><strong>7.</strong> Example</a></li></ul></nav><article id="docs"><header><nav><ul><li><a href><strong>6.</strong> Interaction with Documenter.jl</a></li></ul><a class="edit-page" href="https://github.com/fredrikekre/Literate.jl/blob/master/docs/src/documenter.md"><span class="fa"></span> Edit on GitHub</a></nav><hr/><div id="topbar"><span>6. Interaction with Documenter.jl</span><a class="fa fa-bars" href="#"></a></div></header><h1><a class="nav-anchor" id="Interaction-with-Documenter-1" href="#Interaction-with-Documenter-1"><strong>6.</strong> Interaction with Documenter.jl</a></h1><p>Literate can be used for any purpose, it spits out regular markdown files, and notebooks. Typically, though, these files will be used to render documentation for your package. The generators (<a href="../outputformats/#Literate.markdown"><code>Literate.markdown</code></a>, <a href="../outputformats/#Literate.notebook"><code>Literate.notebook</code></a> and <a href="../outputformats/#Literate.script"><code>Literate.script</code></a>) supports a keyword argument <code>documenter</code> that lets the generator perform some extra things, keeping in mind that the source code have been written with Documenter.jl in mind. So lets take a look at what will happen if we set <code>documenter = true</code>:</p><h3><a class="nav-anchor" id="[Literate.markdown](@ref):-1" href="#[Literate.markdown](@ref):-1"><a href="../outputformats/#Literate.markdown"><code>Literate.markdown</code></a>:</a></h3><ul><li>The default code fence will change from<pre><code class="language-none">```julia
# code
```</code></pre>to Documenters <code>@example</code> blocks:<pre><code class="language-none">```@examples $(name)
# code
```</code></pre></li><li>The following <code>@meta</code> block will be added to the top of the markdown page, which redirects the &quot;Edit on GitHub&quot; link on the top of the page to the <em>source file</em> rather than the generated <code>.md</code> file:<pre><code class="language-none">```@meta
EditURL = &quot;$(relpath(inputfile, outputdir))&quot;
```</code></pre></li></ul><h3><a class="nav-anchor" id="[Literate.notebook](@ref):-1" href="#[Literate.notebook](@ref):-1"><a href="../outputformats/#Literate.notebook"><code>Literate.notebook</code></a>:</a></h3><ul><li>Documenter style <code>@ref</code>s and <code>@id</code> will be removed. This means that you can use <code>@ref</code> and <code>@id</code> in the source file without them leaking to the notebook.</li><li>Documenter style markdown math<pre><code class="language-none">```math
\int f dx
```</code></pre>is replaced with notebook compatible<pre><code class="language-none">\begin{equation}
\int f dx
\end{equation}</code></pre></li></ul><h3><a class="nav-anchor" id="[Literate.script](@ref):-1" href="#[Literate.script](@ref):-1"><a href="../outputformats/#Literate.script"><code>Literate.script</code></a>:</a></h3><ul><li>Documenter style <code>@ref</code>s and <code>@id</code> will be removed. This means that you can use <code>@ref</code> and <code>@id</code> in the source file without them leaking to the script.</li></ul><footer><hr/><a class="previous" href="../customprocessing/"><span class="direction">Previous</span><span class="title"><strong>5.</strong> Custom pre- and post-processing</span></a><a class="next" href="../generated/example/"><span class="direction">Next</span><span class="title"><strong>7.</strong> Example</span></a></footer></article></body></html>

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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>2. File Format · Literate.jl</title><link href="https://cdnjs.cloudflare.com/ajax/libs/normalize/4.2.0/normalize.min.css" rel="stylesheet" type="text/css"/><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.2.0/require.min.js" data-main="assets/documenter.js"></script><script src="siteinfo.js"></script><script src="../versions.js"></script><link href="assets/documenter.css" rel="stylesheet" type="text/css"/></head><body><nav class="toc"><a href="index.html"><img class="logo" src="assets/logo.png" alt="Literate.jl logo"/></a><h1>Literate.jl</h1><select id="version-selector" onChange="window.location.href=this.value" style="visibility: hidden"></select><form class="search" id="search-form" action="search.html"><input id="search-query" name="q" type="text" placeholder="Search docs"/></form><ul><li><a class="toctext" href="index.html"><strong>1.</strong> Introduction</a></li><li class="current"><a class="toctext" href="fileformat.html"><strong>2.</strong> File Format</a><ul class="internal"><li><a class="toctext" href="#Syntax-1"><strong>2.1.</strong> Syntax</a></li><li><a class="toctext" href="#Filtering-Lines-1"><strong>2.2.</strong> Filtering Lines</a></li><li><a class="toctext" href="#Default-Replacements-1"><strong>2.3.</strong> Default Replacements</a></li></ul></li><li><a class="toctext" href="pipeline.html"><strong>3.</strong> Processing pipeline</a></li><li><a class="toctext" href="outputformats.html"><strong>4.</strong> Output Formats</a></li><li><a class="toctext" href="customprocessing.html"><strong>5.</strong> Custom pre- and post-processing</a></li><li><a class="toctext" href="documenter.html"><strong>6.</strong> Interaction with Documenter.jl</a></li><li><a class="toctext" href="generated/example.html"><strong>7.</strong> Example</a></li></ul></nav><article id="docs"><header><nav><ul><li><a href="fileformat.html"><strong>2.</strong> File Format</a></li></ul><a class="edit-page" href="https://github.com/fredrikekre/Literate.jl/blob/master/docs/src/fileformat.md"><span class="fa"></span> Edit on GitHub</a></nav><hr/><div id="topbar"><span>2. File Format</span><a class="fa fa-bars" href="#"></a></div></header><h1><a class="nav-anchor" id="**2.**-File-Format-1" href="#**2.**-File-Format-1"><strong>2.</strong> File Format</a></h1><p>The source file format for Literate is a regular, commented, julia (<code>.jl</code>) scripts. The idea is that the scripts also serve as documentation on their own and it is also simple to include them in the test-suite, with e.g. <code>include</code>, to make sure the examples stay up do date with other changes in your package.</p><h2><a class="nav-anchor" id="Syntax-1" href="#Syntax-1"><strong>2.1.</strong> Syntax</a></h2><p>The basic syntax is simple:</p><ul><li>lines starting with <code>#</code> are treated as markdown,</li><li>all other lines are treated as julia code.</li></ul><p>Leading whitespace is allowed before <code>#</code>, but it will be removed when generating the output. Since <code>#</code>-lines is treated as markdown we can not use that for regular julia comments, for this you can instead use <code>##</code>, which will render as <code>#</code> in the output.</p><p>Lets look at a simple example:</p><pre><code class="language-julia"># # Rational numbers
#
# In julia rational numbers can be constructed with the `//` operator.
# Lets define two rational numbers, `x` and `y`:
x = 1//3
y = 2//5
# When adding `x` and `y` together we obtain a new rational number:
z = x + y</code></pre><p>In the lines starting with <code>#</code> we can use regular markdown syntax, for example the <code>#</code> used for the heading and the backticks for formatting code. The other lines are regular julia code. We note a couple of things:</p><ul><li>The script is valid julia, which means that we can <code>include</code> it and the example will run (for example in the <code>test/runtests.jl</code> script, to include the example in the test suite).</li><li>The script is &quot;self-explanatory&quot;, i.e. the markdown lines works as comments and thus serve as good documentation on its own.</li></ul><p>For simple use this is all you need to know. The following additional special syntax can also be used:</p><ul><li><code>#md</code>, <code>#nb</code>, <code>#jl</code>, <code>#src</code>: tags to filter lines, see <a href="fileformat.html#Filtering-Lines-1">Filtering Lines</a>,</li><li><code>#-</code>: tag to manually control chunk-splits, see <a href="pipeline.html#Custom-control-over-chunk-splits-1">Custom control over chunk splits</a>.</li></ul><p>There is also some default convenience replacements that will always be performed, see <a href="fileformat.html#Default-Replacements-1">Default Replacements</a>.</p><h2><a class="nav-anchor" id="Filtering-Lines-1" href="#Filtering-Lines-1"><strong>2.2.</strong> Filtering Lines</a></h2><p>It is often useful to filter out lines in the source depending on the output format. For this purpose there are a number of &quot;tokens&quot; that can be used to mark the purpose of certain lines:</p><ul><li><code>#md</code>: line exclusive to markdown output,</li><li><code>#nb</code>: line exclusive to notebook output,</li><li><code>#jl</code>: line exclusive to script output,</li><li><code>#src</code>: line exclusive to the source code and thus filtered out unconditionally.</li></ul><p>Lines <em>starting</em> with one of these tokens are filtered out in the <a href="pipeline.html#Pre-processing-1">preprocessing step</a>.</p><p>Suppose, for example, that we want to include a docstring within a <code>@docs</code> block using Documenter. Obviously we don&#39;t want to include this in the notebook, since <code>@docs</code> is Documenter syntax that the notebook will not understand. This is a case where we can prepend <code>#md</code> to those lines:</p><pre><code class="language-julia">#md # ```@docs
#md # Literate.markdown
#md # Literate.notebook
#md # Literate.markdown
#md # ```</code></pre><p>The lines in the example above would be filtered out in the preprocessing step, unless we are generating a markdown file. When generating a markdown file we would simple remove the leading <code>#md</code> from the lines. Beware that the space after the tag is also removed.</p><p>The <code>#src</code> token can also be placed at the <em>end</em> of a line. This is to make it possible to have code lines exclusive to the source code, and not just comment lines. For example, if the source file is included in the test suite we might want to add a <code>@test</code> at the end without this showing up in the outputs:</p><pre><code class="language-julia">using Test #src
@test result == expected_result #src</code></pre><h2><a class="nav-anchor" id="Default-Replacements-1" href="#Default-Replacements-1"><strong>2.3.</strong> Default Replacements</a></h2><p>The following convenience &quot;macros&quot; are always expanded:</p><ul><li><p><code>@__NAME__</code></p><p>expands to the <code>name</code> keyword argument to <a href="outputformats.html#Literate.markdown"><code>Literate.markdown</code></a>, <a href="outputformats.html#Literate.notebook"><code>Literate.notebook</code></a> and <a href="outputformats.html#Literate.script"><code>Literate.script</code></a> (defaults to the filename of the input file).</p></li><li><p><code>@__REPO__ROOT_URL__</code></p><p>expands to <code>https://github.com/$(ENV[&quot;TRAVIS_REPO_SLUG&quot;])/blob/master/</code> and is a convenient way to use when you want to link to files outside the doc-build directory. For example <code>@__REPO__ROOT_URL__src/Literate.jl</code> would link to the source of the Literate module.</p></li><li><p><code>@__NBVIEWER_ROOT_URL__</code></p><p>expands to <code>https://nbviewer.jupyter.org/github/$(ENV[&quot;TRAVIS_REPO_SLUG&quot;])/blob/gh-pages/$(folder)/</code> where <code>folder</code> is the folder that <code>Documenter.deploydocs</code> deploys too. This can be used if you want a link that opens the generated notebook in <a href="http://nbviewer.jupyter.org/">http://nbviewer.jupyter.org/</a>.</p></li></ul><footer><hr/><a class="previous" href="index.html"><span class="direction">Previous</span><span class="title"><strong>1.</strong> Introduction</span></a><a class="next" href="pipeline.html"><span class="direction">Next</span><span class="title"><strong>3.</strong> Processing pipeline</span></a></footer></article></body></html>

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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>2. File Format · Literate.jl</title><link href="https://cdnjs.cloudflare.com/ajax/libs/normalize/4.2.0/normalize.min.css" rel="stylesheet" type="text/css"/><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.2.0/require.min.js" data-main="../assets/documenter.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link href="../assets/documenter.css" rel="stylesheet" type="text/css"/></head><body><nav class="toc"><a href="../index.html"><img class="logo" src="../assets/logo.png" alt="Literate.jl logo"/></a><h1>Literate.jl</h1><select id="version-selector" onChange="window.location.href=this.value" style="visibility: hidden"></select><form class="search" id="search-form" action="../search/"><input id="search-query" name="q" type="text" placeholder="Search docs"/></form><ul><li><a class="toctext" href="../"><strong>1.</strong> Introduction</a></li><li class="current"><a class="toctext" href><strong>2.</strong> File Format</a><ul class="internal"><li><a class="toctext" href="#Syntax-1"><strong>2.1.</strong> Syntax</a></li><li><a class="toctext" href="#Filtering-Lines-1"><strong>2.2.</strong> Filtering Lines</a></li><li><a class="toctext" href="#Default-Replacements-1"><strong>2.3.</strong> Default Replacements</a></li></ul></li><li><a class="toctext" href="../pipeline/"><strong>3.</strong> Processing pipeline</a></li><li><a class="toctext" href="../outputformats/"><strong>4.</strong> Output Formats</a></li><li><a class="toctext" href="../customprocessing/"><strong>5.</strong> Custom pre- and post-processing</a></li><li><a class="toctext" href="../documenter/"><strong>6.</strong> Interaction with Documenter.jl</a></li><li><a class="toctext" href="../generated/example/"><strong>7.</strong> Example</a></li></ul></nav><article id="docs"><header><nav><ul><li><a href><strong>2.</strong> File Format</a></li></ul><a class="edit-page" href="https://github.com/fredrikekre/Literate.jl/blob/master/docs/src/fileformat.md"><span class="fa"></span> Edit on GitHub</a></nav><hr/><div id="topbar"><span>2. File Format</span><a class="fa fa-bars" href="#"></a></div></header><h1><a class="nav-anchor" id="**2.**-File-Format-1" href="#**2.**-File-Format-1"><strong>2.</strong> File Format</a></h1><p>The source file format for Literate is a regular, commented, julia (<code>.jl</code>) scripts. The idea is that the scripts also serve as documentation on their own and it is also simple to include them in the test-suite, with e.g. <code>include</code>, to make sure the examples stay up do date with other changes in your package.</p><h2><a class="nav-anchor" id="Syntax-1" href="#Syntax-1"><strong>2.1.</strong> Syntax</a></h2><p>The basic syntax is simple:</p><ul><li>lines starting with <code>#</code> are treated as markdown,</li><li>all other lines are treated as julia code.</li></ul><p>Leading whitespace is allowed before <code>#</code>, but it will be removed when generating the output. Since <code>#</code>-lines is treated as markdown we can not use that for regular julia comments, for this you can instead use <code>##</code>, which will render as <code>#</code> in the output.</p><p>Lets look at a simple example:</p><pre><code class="language-julia"># # Rational numbers
#
# In julia rational numbers can be constructed with the `//` operator.
# Lets define two rational numbers, `x` and `y`:
x = 1//3
y = 2//5
# When adding `x` and `y` together we obtain a new rational number:
z = x + y</code></pre><p>In the lines starting with <code>#</code> we can use regular markdown syntax, for example the <code>#</code> used for the heading and the backticks for formatting code. The other lines are regular julia code. We note a couple of things:</p><ul><li>The script is valid julia, which means that we can <code>include</code> it and the example will run (for example in the <code>test/runtests.jl</code> script, to include the example in the test suite).</li><li>The script is &quot;self-explanatory&quot;, i.e. the markdown lines works as comments and thus serve as good documentation on its own.</li></ul><p>For simple use this is all you need to know. The following additional special syntax can also be used:</p><ul><li><code>#md</code>, <code>#nb</code>, <code>#jl</code>, <code>#src</code>: tags to filter lines, see <a href="#Filtering-Lines-1">Filtering Lines</a>,</li><li><code>#-</code>: tag to manually control chunk-splits, see <a href="../pipeline/#Custom-control-over-chunk-splits-1">Custom control over chunk splits</a>.</li></ul><p>There is also some default convenience replacements that will always be performed, see <a href="#Default-Replacements-1">Default Replacements</a>.</p><h2><a class="nav-anchor" id="Filtering-Lines-1" href="#Filtering-Lines-1"><strong>2.2.</strong> Filtering Lines</a></h2><p>It is often useful to filter out lines in the source depending on the output format. For this purpose there are a number of &quot;tokens&quot; that can be used to mark the purpose of certain lines:</p><ul><li><code>#md</code>: line exclusive to markdown output,</li><li><code>#nb</code>: line exclusive to notebook output,</li><li><code>#jl</code>: line exclusive to script output,</li><li><code>#src</code>: line exclusive to the source code and thus filtered out unconditionally.</li></ul><p>Lines <em>starting</em> with one of these tokens are filtered out in the <a href="../pipeline/#Pre-processing-1">preprocessing step</a>.</p><p>Suppose, for example, that we want to include a docstring within a <code>@docs</code> block using Documenter. Obviously we don&#39;t want to include this in the notebook, since <code>@docs</code> is Documenter syntax that the notebook will not understand. This is a case where we can prepend <code>#md</code> to those lines:</p><pre><code class="language-julia">#md # ```@docs
#md # Literate.markdown
#md # Literate.notebook
#md # Literate.markdown
#md # ```</code></pre><p>The lines in the example above would be filtered out in the preprocessing step, unless we are generating a markdown file. When generating a markdown file we would simple remove the leading <code>#md</code> from the lines. Beware that the space after the tag is also removed.</p><p>The <code>#src</code> token can also be placed at the <em>end</em> of a line. This is to make it possible to have code lines exclusive to the source code, and not just comment lines. For example, if the source file is included in the test suite we might want to add a <code>@test</code> at the end without this showing up in the outputs:</p><pre><code class="language-julia">using Test #src
@test result == expected_result #src</code></pre><h2><a class="nav-anchor" id="Default-Replacements-1" href="#Default-Replacements-1"><strong>2.3.</strong> Default Replacements</a></h2><p>The following convenience &quot;macros&quot; are always expanded:</p><ul><li><p><code>@__NAME__</code></p><p>expands to the <code>name</code> keyword argument to <a href="../outputformats/#Literate.markdown"><code>Literate.markdown</code></a>, <a href="../outputformats/#Literate.notebook"><code>Literate.notebook</code></a> and <a href="../outputformats/#Literate.script"><code>Literate.script</code></a> (defaults to the filename of the input file).</p></li><li><p><code>@__REPO__ROOT_URL__</code></p><p>expands to <code>https://github.com/$(ENV[&quot;TRAVIS_REPO_SLUG&quot;])/blob/master/</code> and is a convenient way to use when you want to link to files outside the doc-build directory. For example <code>@__REPO__ROOT_URL__src/Literate.jl</code> would link to the source of the Literate module.</p></li><li><p><code>@__NBVIEWER_ROOT_URL__</code></p><p>expands to <code>https://nbviewer.jupyter.org/github/$(ENV[&quot;TRAVIS_REPO_SLUG&quot;])/blob/gh-pages/$(folder)/</code> where <code>folder</code> is the folder that <code>Documenter.deploydocs</code> deploys too. This can be used if you want a link that opens the generated notebook in <a href="http://nbviewer.jupyter.org/">http://nbviewer.jupyter.org/</a>.</p></li></ul><footer><hr/><a class="previous" href="../"><span class="direction">Previous</span><span class="title"><strong>1.</strong> Introduction</span></a><a class="next" href="../pipeline/"><span class="direction">Next</span><span class="title"><strong>3.</strong> Processing pipeline</span></a></footer></article></body></html>

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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>7. Example · Literate.jl</title><link href="https://cdnjs.cloudflare.com/ajax/libs/normalize/4.2.0/normalize.min.css" rel="stylesheet" type="text/css"/><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL=".."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.2.0/require.min.js" data-main="../assets/documenter.js"></script><script src="../siteinfo.js"></script><script src="../../versions.js"></script><link href="../assets/documenter.css" rel="stylesheet" type="text/css"/></head><body><nav class="toc"><a href="../index.html"><img class="logo" src="../assets/logo.png" alt="Literate.jl logo"/></a><h1>Literate.jl</h1><select id="version-selector" onChange="window.location.href=this.value" style="visibility: hidden"></select><form class="search" id="search-form" action="../search.html"><input id="search-query" name="q" type="text" placeholder="Search docs"/></form><ul><li><a class="toctext" href="../index.html"><strong>1.</strong> Introduction</a></li><li><a class="toctext" href="../fileformat.html"><strong>2.</strong> File Format</a></li><li><a class="toctext" href="../pipeline.html"><strong>3.</strong> Processing pipeline</a></li><li><a class="toctext" href="../outputformats.html"><strong>4.</strong> Output Formats</a></li><li><a class="toctext" href="../customprocessing.html"><strong>5.</strong> Custom pre- and post-processing</a></li><li><a class="toctext" href="../documenter.html"><strong>6.</strong> Interaction with Documenter.jl</a></li><li class="current"><a class="toctext" href="example.html"><strong>7.</strong> Example</a><ul class="internal"></ul></li></ul></nav><article id="docs"><header><nav><ul><li><a href="example.html"><strong>7.</strong> Example</a></li></ul><a class="edit-page" href="https://github.com/fredrikekre/Literate.jl/blob/master/examples/example.jl"><span class="fa"></span> Edit on GitHub</a></nav><hr/><div id="topbar"><span>7. Example</span><a class="fa fa-bars" href="#"></a></div></header><h1><a class="nav-anchor" id="**7.**-Example-1" href="#**7.**-Example-1"><strong>7.</strong> Example</a></h1><p>This is an example generated with Literate based on this source file: <a href="https://github.com/fredrikekre/Literate.jl/blob/master/examples/example.jl"><code>example.jl</code></a>. You are seeing the html-output which Documenter have generated based on a markdown file generated with Literate. The corresponding notebook can be found here: <a href="https://nbviewer.jupyter.org/github/fredrikekre/Literate.jl/blob/gh-pages/latest/generated/example.ipynb"><code>example.ipynb</code></a>, and the plain script output can be found here: <a href="example.jl"><code>example.jl</code></a>.</p><p>It is recommended to have the <a href="https://github.com/fredrikekre/Literate.jl/blob/master/examples/example.jl">source file</a> available when reading this, to better understand how the syntax in the source file corresponds to the output you are seeing.</p><h3><a class="nav-anchor" id="Basic-syntax-1" href="#Basic-syntax-1">Basic syntax</a></h3><p>The basic syntax for Literate is simple, lines starting with <code>#</code> is interpreted as markdown, and all the other lines are interpreted as code. Here is some code:</p><div><pre><code class="language-julia">x = 1//3
y = 2//5</code></pre><pre><code class="language-none">2//5</code></pre></div><p>In markdown sections we can use markdown syntax. For example, we can write <em>text in italic font</em>, <strong>text in bold font</strong> and use <a href="https://www.youtube.com/watch?v=dQw4w9WgXcQ">links</a>.</p><p>It is possible to filter out lines depending on the output using the <code>#md</code>, <code>#nb</code>, <code>#jl</code> and <code>#src</code> tags (see <a href="../fileformat.html#Filtering-Lines-1">Filtering Lines</a>):</p><ul><li>This line starts with <code>#md</code> and is thus only visible in the markdown output.</li></ul><p>The source file is parsed in chunks of markdown and code. Starting a line with <code>#-</code> manually inserts a chunk break. For example, if we want to display the output of the following operations we may insert <code>#-</code> in between. These two code blocks will now end up in different <code>@example</code>-blocks in the markdown output, and two different notebook cells in the notebook output.</p><div><pre><code class="language-julia">x + y</code></pre><pre><code class="language-none">11//15</code></pre></div><div><pre><code class="language-julia">x * y</code></pre><pre><code class="language-none">2//15</code></pre></div><h3><a class="nav-anchor" id="Output-Capturing-1" href="#Output-Capturing-1">Output Capturing</a></h3><p>Code chunks are by default placed in Documenter <code>@example</code> blocks in the generated markdown. This means that the output will be captured in a block when Documenter is building the docs. In notebooks the output is captured in output cells, if the <code>execute</code> keyword argument is set to true. Output to <code>stdout</code>/<code>stderr</code> is also captured.</p><div><pre><code class="language-julia">function foo()
println(&quot;This string is printed to stdout.&quot;)
return [1, 2, 3, 4]
end
foo()</code></pre><pre><code class="language-none">This string is printed to stdout.
4-element Array{Int64,1}:
1
2
3
4</code></pre></div><p>Both Documenter&#39;s <code>@example</code> block and notebooks can display images. Here is an example where we generate a simple plot using the <a href="https://github.com/JuliaPlots/Plots.jl">Plots.jl</a> package</p><div><pre><code class="language-julia">using Plots
x = range(0, stop=6π, length=1000)
y1 = sin.(x)
y2 = cos.(x)
plot(x, [y1, y2])</code></pre><?xml version="1.0" encoding="utf-8"?>
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</div><h3><a class="nav-anchor" id="Custom-processing-1" href="#Custom-processing-1">Custom processing</a></h3><p>It is possible to give Literate custom pre- and post-processing functions. For example, here we insert two placeholders, which we will replace with something else at time of generation. We have here replaced our placeholders with <code>z</code> and <code>1.0 + 2.0im</code>:</p><div><pre><code class="language-julia">z = 1.0 + 2.0im</code></pre><pre><code class="language-none">1.0 + 2.0im</code></pre></div><h3><a class="nav-anchor" id="documenter-interaction-1" href="#documenter-interaction-1">Documenter.jl interaction</a></h3><p>In the source file it is possible to use Documenter.jl style references, such as <code>@ref</code> and <code>@id</code>. These will be filtered out in the notebook output. For example, <a href="example.html#documenter-interaction-1">here is a link</a>, but it is only visible as a link if you are reading the markdown output. We can also use equations:</p><div>\[\int_\Omega \nabla v \cdot \nabla u\ \mathrm{d}\Omega = \int_\Omega v f\ \mathrm{d}\Omega\]</div><p>using Documenters math syntax. Documenters syntax is automatically changed to <code>\begin{equation} ... \end{equation}</code> in the notebook output to display correctly.</p><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p><footer><hr/><a class="previous" href="../documenter.html"><span class="direction">Previous</span><span class="title"><strong>6.</strong> Interaction with Documenter.jl</span></a></footer></article></body></html>

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<html lang="en"><head><meta charset="UTF-8"/><meta name="viewport" content="width=device-width, initial-scale=1.0"/><title>7. Example · Literate.jl</title><link href="https://cdnjs.cloudflare.com/ajax/libs/normalize/4.2.0/normalize.min.css" rel="stylesheet" type="text/css"/><link href="https://fonts.googleapis.com/css?family=Lato|Roboto+Mono" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/font-awesome/4.6.3/css/font-awesome.min.css" rel="stylesheet" type="text/css"/><link href="https://cdnjs.cloudflare.com/ajax/libs/highlight.js/9.12.0/styles/default.min.css" rel="stylesheet" type="text/css"/><script>documenterBaseURL="../.."</script><script src="https://cdnjs.cloudflare.com/ajax/libs/require.js/2.2.0/require.min.js" data-main="../../assets/documenter.js"></script><script src="../../siteinfo.js"></script><script src="../../../versions.js"></script><link href="../../assets/documenter.css" rel="stylesheet" type="text/css"/></head><body><nav class="toc"><a href="../../index.html"><img class="logo" src="../../assets/logo.png" alt="Literate.jl logo"/></a><h1>Literate.jl</h1><select id="version-selector" onChange="window.location.href=this.value" style="visibility: hidden"></select><form class="search" id="search-form" action="../../search/"><input id="search-query" name="q" type="text" placeholder="Search docs"/></form><ul><li><a class="toctext" href="../../"><strong>1.</strong> Introduction</a></li><li><a class="toctext" href="../../fileformat/"><strong>2.</strong> File Format</a></li><li><a class="toctext" href="../../pipeline/"><strong>3.</strong> Processing pipeline</a></li><li><a class="toctext" href="../../outputformats/"><strong>4.</strong> Output Formats</a></li><li><a class="toctext" href="../../customprocessing/"><strong>5.</strong> Custom pre- and post-processing</a></li><li><a class="toctext" href="../../documenter/"><strong>6.</strong> Interaction with Documenter.jl</a></li><li class="current"><a class="toctext" href><strong>7.</strong> Example</a><ul class="internal"></ul></li></ul></nav><article id="docs"><header><nav><ul><li><a href><strong>7.</strong> Example</a></li></ul><a class="edit-page" href="https://github.com/fredrikekre/Literate.jl/blob/master/examples/example.jl"><span class="fa"></span> Edit on GitHub</a></nav><hr/><div id="topbar"><span>7. Example</span><a class="fa fa-bars" href="#"></a></div></header><h1><a class="nav-anchor" id="**7.**-Example-1" href="#**7.**-Example-1"><strong>7.</strong> Example</a></h1><p>This is an example generated with Literate based on this source file: <a href="https://github.com/fredrikekre/Literate.jl/blob/master/examples/example.jl"><code>example.jl</code></a>. You are seeing the html-output which Documenter have generated based on a markdown file generated with Literate. The corresponding notebook can be found here: <a href="https://nbviewer.jupyter.org/github/fredrikekre/Literate.jl/blob/gh-pages/latest/generated/example.ipynb"><code>example.ipynb</code></a>, and the plain script output can be found here: <a href="../example.jl"><code>example.jl</code></a>.</p><p>It is recommended to have the <a href="https://github.com/fredrikekre/Literate.jl/blob/master/examples/example.jl">source file</a> available when reading this, to better understand how the syntax in the source file corresponds to the output you are seeing.</p><h3><a class="nav-anchor" id="Basic-syntax-1" href="#Basic-syntax-1">Basic syntax</a></h3><p>The basic syntax for Literate is simple, lines starting with <code>#</code> is interpreted as markdown, and all the other lines are interpreted as code. Here is some code:</p><div><pre><code class="language-julia">x = 1//3
y = 2//5</code></pre><pre><code class="language-none">2//5</code></pre></div><p>In markdown sections we can use markdown syntax. For example, we can write <em>text in italic font</em>, <strong>text in bold font</strong> and use <a href="https://www.youtube.com/watch?v=dQw4w9WgXcQ">links</a>.</p><p>It is possible to filter out lines depending on the output using the <code>#md</code>, <code>#nb</code>, <code>#jl</code> and <code>#src</code> tags (see <a href="../../fileformat/#Filtering-Lines-1">Filtering Lines</a>):</p><ul><li>This line starts with <code>#md</code> and is thus only visible in the markdown output.</li></ul><p>The source file is parsed in chunks of markdown and code. Starting a line with <code>#-</code> manually inserts a chunk break. For example, if we want to display the output of the following operations we may insert <code>#-</code> in between. These two code blocks will now end up in different <code>@example</code>-blocks in the markdown output, and two different notebook cells in the notebook output.</p><div><pre><code class="language-julia">x + y</code></pre><pre><code class="language-none">11//15</code></pre></div><div><pre><code class="language-julia">x * y</code></pre><pre><code class="language-none">2//15</code></pre></div><h3><a class="nav-anchor" id="Output-Capturing-1" href="#Output-Capturing-1">Output Capturing</a></h3><p>Code chunks are by default placed in Documenter <code>@example</code> blocks in the generated markdown. This means that the output will be captured in a block when Documenter is building the docs. In notebooks the output is captured in output cells, if the <code>execute</code> keyword argument is set to true. Output to <code>stdout</code>/<code>stderr</code> is also captured.</p><div><pre><code class="language-julia">function foo()
println(&quot;This string is printed to stdout.&quot;)
return [1, 2, 3, 4]
end
foo()</code></pre><pre><code class="language-none">This string is printed to stdout.
4-element Array{Int64,1}:
1
2
3
4</code></pre></div><p>Both Documenter&#39;s <code>@example</code> block and notebooks can display images. Here is an example where we generate a simple plot using the <a href="https://github.com/JuliaPlots/Plots.jl">Plots.jl</a> package</p><div><pre><code class="language-julia">using Plots
x = range(0, stop=6π, length=1000)
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y2 = cos.(x)
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</div><h3><a class="nav-anchor" id="Custom-processing-1" href="#Custom-processing-1">Custom processing</a></h3><p>It is possible to give Literate custom pre- and post-processing functions. For example, here we insert two placeholders, which we will replace with something else at time of generation. We have here replaced our placeholders with <code>z</code> and <code>1.0 + 2.0im</code>:</p><div><pre><code class="language-julia">z = 1.0 + 2.0im</code></pre><pre><code class="language-none">1.0 + 2.0im</code></pre></div><h3><a class="nav-anchor" id="documenter-interaction-1" href="#documenter-interaction-1">Documenter.jl interaction</a></h3><p>In the source file it is possible to use Documenter.jl style references, such as <code>@ref</code> and <code>@id</code>. These will be filtered out in the notebook output. For example, <a href="#documenter-interaction-1">here is a link</a>, but it is only visible as a link if you are reading the markdown output. We can also use equations:</p><div>\[\int_\Omega \nabla v \cdot \nabla u\ \mathrm{d}\Omega = \int_\Omega v f\ \mathrm{d}\Omega\]</div><p>using Documenters math syntax. Documenters syntax is automatically changed to <code>\begin{equation} ... \end{equation}</code> in the notebook output to display correctly.</p><p><em>This page was generated using <a href="https://github.com/fredrikekre/Literate.jl">Literate.jl</a>.</em></p><footer><hr/><a class="previous" href="../../documenter/"><span class="direction">Previous</span><span class="title"><strong>6.</strong> Interaction with Documenter.jl</span></a></footer></article></body></html>

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@ -217,7 +217,7 @@ var documenterSearchIndex = {"docs": [ @@ -217,7 +217,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "customprocessing.html#Example:-Adding-current-date-1",
"location": "customprocessing/#Example:-Adding-current-date-1",
"page": "5. Custom pre- and post-processing",
"title": "Example: Adding current date",
"category": "section",
@ -225,7 +225,7 @@ var documenterSearchIndex = {"docs": [ @@ -225,7 +225,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "customprocessing.html#Example:-Replacing-include-calls-with-included-code-1",
"location": "customprocessing/#Example:-Replacing-include-calls-with-included-code-1",
"page": "5. Custom pre- and post-processing",
"title": "Example: Replacing include calls with included code",
"category": "section",
@ -233,7 +233,7 @@ var documenterSearchIndex = {"docs": [ @@ -233,7 +233,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "documenter.html#",
"location": "documenter/#",
"page": "6. Interaction with Documenter.jl",
"title": "6. Interaction with Documenter.jl",
"category": "page",
@ -241,7 +241,7 @@ var documenterSearchIndex = {"docs": [ @@ -241,7 +241,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "documenter.html#Interaction-with-Documenter-1",
"location": "documenter/#Interaction-with-Documenter-1",
"page": "6. Interaction with Documenter.jl",
"title": "6. Interaction with Documenter.jl",
"category": "section",
@ -249,7 +249,7 @@ var documenterSearchIndex = {"docs": [ @@ -249,7 +249,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "documenter.html#[Literate.markdown](@ref):-1",
"location": "documenter/#[Literate.markdown](@ref):-1",
"page": "6. Interaction with Documenter.jl",
"title": "Literate.markdown:",
"category": "section",
@ -257,7 +257,7 @@ var documenterSearchIndex = {"docs": [ @@ -257,7 +257,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "documenter.html#[Literate.notebook](@ref):-1",
"location": "documenter/#[Literate.notebook](@ref):-1",
"page": "6. Interaction with Documenter.jl",
"title": "Literate.notebook:",
"category": "section",
@ -265,7 +265,7 @@ var documenterSearchIndex = {"docs": [ @@ -265,7 +265,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "documenter.html#[Literate.script](@ref):-1",
"location": "documenter/#[Literate.script](@ref):-1",
"page": "6. Interaction with Documenter.jl",
"title": "Literate.script:",
"category": "section",
@ -273,7 +273,7 @@ var documenterSearchIndex = {"docs": [ @@ -273,7 +273,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "generated/example.html#",
"location": "generated/example/#",
"page": "7. Example",
"title": "7. Example",
"category": "page",
@ -281,7 +281,7 @@ var documenterSearchIndex = {"docs": [ @@ -281,7 +281,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "generated/example.html#**7.**-Example-1",
"location": "generated/example/#**7.**-Example-1",
"page": "7. Example",
"title": "7. Example",
"category": "section",
@ -289,7 +289,7 @@ var documenterSearchIndex = {"docs": [ @@ -289,7 +289,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "generated/example.html#Basic-syntax-1",
"location": "generated/example/#Basic-syntax-1",
"page": "7. Example",
"title": "Basic syntax",
"category": "section",
@ -297,7 +297,7 @@ var documenterSearchIndex = {"docs": [ @@ -297,7 +297,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "generated/example.html#Output-Capturing-1",
"location": "generated/example/#Output-Capturing-1",
"page": "7. Example",
"title": "Output Capturing",
"category": "section",
@ -305,7 +305,7 @@ var documenterSearchIndex = {"docs": [ @@ -305,7 +305,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "generated/example.html#Custom-processing-1",
"location": "generated/example/#Custom-processing-1",
"page": "7. Example",
"title": "Custom processing",
"category": "section",
@ -313,7 +313,7 @@ var documenterSearchIndex = {"docs": [ @@ -313,7 +313,7 @@ var documenterSearchIndex = {"docs": [
},
{
"location": "generated/example.html#documenter-interaction-1",
"location": "generated/example/#documenter-interaction-1",
"page": "7. Example",
"title": "Documenter.jl interaction",
"category": "section",

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